View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6332_high_17 (Length: 244)
Name: NF6332_high_17
Description: NF6332
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6332_high_17 |
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Alignment Details
Target: chr7 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 6063513 - 6063749
Alignment:
| Q |
1 |
agcaaaaataagtagctatgtttcattccttattgagtgtcggcctctttcaatcagtatgggaaatgcaattagatttctcaaaagtcaaattgcaaag |
100 |
Q |
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| T |
6063513 |
agcaaaaataagtagctatgtttcattccttattgagtgtcggcctctttcaatcagtatgggaaatgcaattagatttctcaaaagtcaaattgcaaag |
6063612 |
T |
|
| Q |
101 |
ctacctctgacactgtctgagtcagaatcacaaacttctcttcaatcagatattgagcgtttcatatatgagaagattatacttgctgacaaggtgatag |
200 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6063613 |
ctacctctgacactgtctgagtcagaatcaaaaacttctcttcaatcagatattgagcgtttcatatatgagaagattatacttgctgacaaggtgatag |
6063712 |
T |
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| Q |
201 |
tagagcatgctgtcacaaaaataagagatgatgatgt |
237 |
Q |
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|||||||||||||||||||||||||||||| |||||| |
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| T |
6063713 |
tagagcatgctgtcacaaaaataagagatggtgatgt |
6063749 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 102; Significance: 9e-51; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 6745844 - 6746073
Alignment:
| Q |
1 |
agcaaaaataagtagctatgtttcattccttattgagtgtcggcctctttcaatcagtatgggaaatgcaattagatttctcaaaagtcaaattgcaaag |
100 |
Q |
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||||||||| |||| ||||| ||||| ||||||||||| || ||||| |||||||| |||||||||||||||||||||||||||||||| || || ||| |
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| T |
6745844 |
agcaaaaattggtagttatgtatcatttcttattgagtgccgacctctgtcaatcagcatgggaaatgcaattagatttctcaaaagtcagatagccaag |
6745943 |
T |
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| Q |
101 |
ctacctctgacactgtctgagtcagaatcacaaacttctcttcaatcagatattgagcgtttcatatatgagaagattatacttgctgacaaggtgatag |
200 |
Q |
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| T |
6745944 |
ctacctttaaccttgtctgagtcagaagcaaaaacttctctccaagcagatattgagcgttttataagtgagaagatcgtacttgccaacaaggtcatag |
6746043 |
T |
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| Q |
201 |
tagagcatgctgtcacaaaaataagagatg |
230 |
Q |
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| |||| |||||||| ||||||||||||| |
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| T |
6746044 |
tcaagcacgctgtcaccaaaataagagatg |
6746073 |
T |
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