View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6332_high_24 (Length: 223)
Name: NF6332_high_24
Description: NF6332
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6332_high_24 |
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Alignment Details
Target: chr7 (Bit Score: 199; Significance: 1e-108; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 207
Target Start/End: Complemental strand, 8177391 - 8177185
Alignment:
| Q |
1 |
ttgaggatactcgattggaaacttgtaattcaaagaaagaaggtttggatttcataaaaaatgaatgcatttacccaatccgccaatcaatatgtcttga |
100 |
Q |
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| T |
8177391 |
ttgaggatactcgattggaaacttgtaattcaaagaaagaagctttggatttcataaaaaatgaatgcatttacccaatccgccaatcaatatgtcttga |
8177292 |
T |
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| Q |
101 |
tgaccactccattggaatggtttggattcttcctcatgctaatgatgagaagtataaagcagatatgggttatgctattggattcaactattggggtcaa |
200 |
Q |
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| T |
8177291 |
tgaccactccattggaatggtttggattcttcctcatgctaatgatgagaaatataaagcagatatgggttatgctattggattcaactattggggtcaa |
8177192 |
T |
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| Q |
201 |
gggattg |
207 |
Q |
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||||||| |
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| T |
8177191 |
gggattg |
8177185 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 49 - 202
Target Start/End: Complemental strand, 8169756 - 8169606
Alignment:
| Q |
49 |
atttcataaaaaatgaatgcatttacccaatccgccaatcaatatgtcttgatgaccactccattggaatggtttggattcttcctcatgctaatgatga |
148 |
Q |
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| T |
8169756 |
atttcataaaaaatgattgcatttacccattccaacaatcaatatgtcttaatgatcactctattggaattgtttttgtccttccttatcc---tgatgc |
8169660 |
T |
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| Q |
149 |
gaagtataaagcagatatgggttatgctattggattcaactattggggtcaagg |
202 |
Q |
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| T |
8169659 |
aaagtttaaagcagatttaggttatgctattgggtttaactattggggccaagg |
8169606 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 44 - 202
Target Start/End: Complemental strand, 8172392 - 8172237
Alignment:
| Q |
44 |
tttggatttcataaaaaatgaatgcatttacccaatccgccaatcaatatgtcttgatgaccactccattggaatggtttggattcttcctcatgctaat |
143 |
Q |
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|||| |||||||||| || || || ||||||||| ||| |||||||||||||||||||| ||||| |||||||| |||| ||||||| | | | |
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| T |
8172392 |
tttgaatttcataaagaaagattgtatttacccattccaacaatcaatatgtcttgatgatcactctattggaattgtttttgttcttccaatttc---t |
8172296 |
T |
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| Q |
144 |
gatgagaagtataaagcagatatgggttatgctattggattcaactattggggtcaagg |
202 |
Q |
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||| |||| |||||||||| | |||| ||||||||||||||| |||||||| ||||| |
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| T |
8172295 |
tatgcaaagtttaaagcagatttaggttttgctattggattcaattattggggccaagg |
8172237 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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