View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6332_low_13 (Length: 276)
Name: NF6332_low_13
Description: NF6332
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6332_low_13 |
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Alignment Details
Target: chr7 (Bit Score: 230; Significance: 1e-127; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 18 - 263
Target Start/End: Complemental strand, 8433249 - 8433004
Alignment:
| Q |
18 |
gttataaaaccaacgtatggcttcattcattgttacattgcttagctgttgagttgattgtaagggtcctccagctttgttcataccagttttctaatta |
117 |
Q |
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| T |
8433249 |
gttataaaaccaacgtatggtttcattcattgttacattgcttagctgttgagttgattgtaagggtcctccagctttgttcataccagttttctaattg |
8433150 |
T |
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| Q |
118 |
gtaatgaggtttgagaacctatggcagggagggatagtcacaaatttgagagagacaattttttaaatttgtggtcgttccttgttataagttcttgtgc |
217 |
Q |
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| T |
8433149 |
gtaatgaggtttgagaacctatggcagggagggatagtcacaaatttgagagagacaattttttaaatttgttgtccttccttgttataagttcttgtgc |
8433050 |
T |
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| Q |
218 |
gctcatcttcttgttcagttgtaagatttgtggtttttccggcttc |
263 |
Q |
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| T |
8433049 |
gctcatcttcttgttcagttgtaagatttgtggtttttccggcttc |
8433004 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 73
Target Start/End: Complemental strand, 8356389 - 8356332
Alignment:
| Q |
18 |
gttataaaaccaacgtatggcttcattcattgttacattgct--tagctgttgagttg |
73 |
Q |
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|||||||||||||||||| | ||||||||||||||||| || |||||||||||||| |
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| T |
8356389 |
gttataaaaccaacgtataacatcattcattgttacattacttatagctgttgagttg |
8356332 |
T |
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