View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6332_low_17 (Length: 252)

Name: NF6332_low_17
Description: NF6332
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6332_low_17
NF6332_low_17
[»] chr5 (3 HSPs)
chr5 (98-141)||(24108805-24108848)
chr5 (19-68)||(24108726-24108775)
chr5 (104-141)||(41709613-41709650)
[»] chr7 (8 HSPs)
chr7 (100-142)||(42513061-42513103)
chr7 (19-68)||(6102930-6102979)
chr7 (104-142)||(30452810-30452848)
chr7 (96-141)||(4257365-4257410)
chr7 (104-141)||(30456419-30456456)
chr7 (96-141)||(41712397-41712442)
chr7 (100-141)||(49017236-49017277)
chr7 (96-141)||(6103008-6103053)
[»] chr2 (4 HSPs)
chr2 (96-142)||(31211918-31211964)
chr2 (96-130)||(31193282-31193316)
chr2 (96-130)||(40400920-40400954)
chr2 (96-125)||(45327420-45327449)
[»] chr6 (7 HSPs)
chr6 (100-141)||(7426695-7426736)
chr6 (100-143)||(33242957-33243000)
chr6 (100-142)||(7422756-7422798)
chr6 (104-142)||(13886654-13886692)
chr6 (19-68)||(4834747-4834796)
chr6 (104-141)||(4834832-4834869)
chr6 (108-141)||(16389217-16389250)
[»] chr4 (7 HSPs)
chr4 (99-142)||(36050771-36050814)
chr4 (99-141)||(36054030-36054072)
chr4 (104-142)||(55322333-55322371)
chr4 (19-68)||(24733644-24733693)
chr4 (104-141)||(27387733-27387770)
chr4 (96-139)||(12638115-12638158)
chr4 (108-141)||(10129632-10129665)
[»] chr8 (2 HSPs)
chr8 (104-142)||(44762080-44762118)
chr8 (104-141)||(44765387-44765424)
[»] chr3 (6 HSPs)
chr3 (100-142)||(19798050-19798092)
chr3 (100-142)||(19798295-19798337)
chr3 (104-141)||(36326603-36326640)
chr3 (104-142)||(1830902-1830940)
chr3 (100-142)||(18319509-18319551)
chr3 (104-141)||(14029440-14029477)
[»] chr1 (2 HSPs)
chr1 (96-142)||(18583885-18583931)
chr1 (104-142)||(23405474-23405512)


Alignment Details
Target: chr5 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 98 - 141
Target Start/End: Original strand, 24108805 - 24108848
Alignment:
Q  98 cttaatttctggagtgtgatccctactcgaattaggtcgtatca 141  Q
    ||||||||||||||||||||||||||||||||| ||||||||||    
T  24108805 cttaatttctggagtgtgatccctactcgaattgggtcgtatca 24108848  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 19 - 68
Target Start/End: Original strand, 24108726 - 24108775
Alignment:
Q  19 atataatcattgtatgtttcatgattagactcaatgaaaaatataatgaa 68  Q
    |||||| |||||||||| | |||||||||  |||||||||||||||||||    
T  24108726 atataagcattgtatgtcttatgattagaaccaatgaaaaatataatgaa 24108775  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 104 - 141
Target Start/End: Original strand, 41709613 - 41709650
Alignment:
Q  104 ttctggagtgtgatccctactcgaattaggtcgtatca 141  Q
    ||||||||||||||| ||||||||||| ||||||||||    
T  41709613 ttctggagtgtgatctctactcgaattgggtcgtatca 41709650  T

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Target: chr7 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 100 - 142
Target Start/End: Complemental strand, 42513103 - 42513061
Alignment:
Q  100 taatttctggagtgtgatccctactcgaattaggtcgtatcat 142  Q
    ||||||||||||||||||||||||||||||| |||||||||||    
T  42513103 taatttctggagtgtgatccctactcgaattgggtcgtatcat 42513061  T

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Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 19 - 68
Target Start/End: Original strand, 6102930 - 6102979
Alignment:
Q  19 atataatcattgtatgtttcatgattagactcaatgaaaaatataatgaa 68  Q
    |||||| |||||||| ||||||||||||| ||||||||||||||||||||    
T  6102930 atataagcattgtatctttcatgattagaatcaatgaaaaatataatgaa 6102979  T

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Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 104 - 142
Target Start/End: Original strand, 30452810 - 30452848
Alignment:
Q  104 ttctggagtgtgatccctactcgaattaggtcgtatcat 142  Q
    ||||||||||||||||||||||||||| |||||||||||    
T  30452810 ttctggagtgtgatccctactcgaattgggtcgtatcat 30452848  T

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Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 96 - 141
Target Start/End: Complemental strand, 4257410 - 4257365
Alignment:
Q  96 ctcttaatttctggagtgtgatccctactcgaattaggtcgtatca 141  Q
    ||||||||||||||||||||||||||||||  ||| ||||||||||    
T  4257410 ctcttaatttctggagtgtgatccctactcatattgggtcgtatca 4257365  T

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Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 104 - 141
Target Start/End: Original strand, 30456419 - 30456456
Alignment:
Q  104 ttctggagtgtgatccctactcgaattaggtcgtatca 141  Q
    ||||||||||||||||||||||||||| ||||||||||    
T  30456419 ttctggagtgtgatccctactcgaattgggtcgtatca 30456456  T

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Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 96 - 141
Target Start/End: Original strand, 41712397 - 41712442
Alignment:
Q  96 ctcttaatttctggagtgtgatccctactcgaattaggtcgtatca 141  Q
    |||||||||| ||||||||||||| |||||||||| ||||||||||    
T  41712397 ctcttaatttttggagtgtgatccttactcgaattgggtcgtatca 41712442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 100 - 141
Target Start/End: Original strand, 49017236 - 49017277
Alignment:
Q  100 taatttctggagtgtgatccctactcgaattaggtcgtatca 141  Q
    |||||| |||||||||||||||| ||||||||||||||||||    
T  49017236 taatttatggagtgtgatccctattcgaattaggtcgtatca 49017277  T

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Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 96 - 141
Target Start/End: Original strand, 6103008 - 6103053
Alignment:
Q  96 ctcttaatttctggagtgtgatccctactcgaattaggtcgtatca 141  Q
    |||||||||| ||||||||||| |||||||||||| ||| ||||||    
T  6103008 ctcttaatttatggagtgtgattcctactcgaattgggttgtatca 6103053  T

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Target: chr2 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 96 - 142
Target Start/End: Original strand, 31211918 - 31211964
Alignment:
Q  96 ctcttaatttctggagtgtgatccctactcgaattaggtcgtatcat 142  Q
    ||||||||||||||||||||||||||||||||||| | |||||||||    
T  31211918 ctcttaatttctggagtgtgatccctactcgaattggatcgtatcat 31211964  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 96 - 130
Target Start/End: Original strand, 31193282 - 31193316
Alignment:
Q  96 ctcttaatttctggagtgtgatccctactcgaatt 130  Q
    |||||||||||| ||||||||||||||||||||||    
T  31193282 ctcttaatttctagagtgtgatccctactcgaatt 31193316  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 96 - 130
Target Start/End: Complemental strand, 40400954 - 40400920
Alignment:
Q  96 ctcttaatttctggagtgtgatccctactcgaatt 130  Q
    |||| ||||||||||||||||||||||||||||||    
T  40400954 ctctaaatttctggagtgtgatccctactcgaatt 40400920  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 96 - 125
Target Start/End: Complemental strand, 45327449 - 45327420
Alignment:
Q  96 ctcttaatttctggagtgtgatccctactc 125  Q
    ||||||||||||||||||||||||||||||    
T  45327449 ctcttaatttctggagtgtgatccctactc 45327420  T

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Target: chr6 (Bit Score: 38; Significance: 0.000000000001; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 100 - 141
Target Start/End: Original strand, 7426695 - 7426736
Alignment:
Q  100 taatttctggagtgtgatccctactcgaattaggtcgtatca 141  Q
    ||||||||||||||||||||||||||||||| ||||||||||    
T  7426695 taatttctggagtgtgatccctactcgaattgggtcgtatca 7426736  T

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Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 100 - 143
Target Start/End: Original strand, 33242957 - 33243000
Alignment:
Q  100 taatttctggagtgtgatccctactcgaattaggtcgtatcatc 143  Q
    ||||||||||||||||||| ||||||||||| ||||||||||||    
T  33242957 taatttctggagtgtgatctctactcgaattgggtcgtatcatc 33243000  T

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Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 100 - 142
Target Start/End: Original strand, 7422756 - 7422798
Alignment:
Q  100 taatttctggagtgtgatccctactcgaattaggtcgtatcat 142  Q
    |||||||| |||||||||||||||||||||| |||||||||||    
T  7422756 taatttcttgagtgtgatccctactcgaattgggtcgtatcat 7422798  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 104 - 142
Target Start/End: Original strand, 13886654 - 13886692
Alignment:
Q  104 ttctggagtgtgatccctactcgaattaggtcgtatcat 142  Q
    |||||||||||||||||||||| |||| |||||||||||    
T  13886654 ttctggagtgtgatccctactcaaattgggtcgtatcat 13886692  T

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Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 19 - 68
Target Start/End: Original strand, 4834747 - 4834796
Alignment:
Q  19 atataatcattgtatgtttcatgattagactcaatgaaaaatataatgaa 68  Q
    |||||| |||||||||  |||| |||||| ||||||||||||||||||||    
T  4834747 atataagcattgtatgcctcattattagaatcaatgaaaaatataatgaa 4834796  T

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Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 104 - 141
Target Start/End: Original strand, 4834832 - 4834869
Alignment:
Q  104 ttctggagtgtgatccctactcgaattaggtcgtatca 141  Q
    |||||||||||||||||||||| |||| ||||||||||    
T  4834832 ttctggagtgtgatccctactcaaattgggtcgtatca 4834869  T

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Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 108 - 141
Target Start/End: Complemental strand, 16389250 - 16389217
Alignment:
Q  108 ggagtgtgatccctactcgaattaggtcgtatca 141  Q
    ||||||||||||||||||||||| ||||||||||    
T  16389250 ggagtgtgatccctactcgaattgggtcgtatca 16389217  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 99 - 142
Target Start/End: Original strand, 36050771 - 36050814
Alignment:
Q  99 ttaatttctggagtgtgatccctactcgaattaggtcgtatcat 142  Q
    ||||||| |||||||||||||||||||||||| |||||||||||    
T  36050771 ttaatttttggagtgtgatccctactcgaattgggtcgtatcat 36050814  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 99 - 141
Target Start/End: Original strand, 36054030 - 36054072
Alignment:
Q  99 ttaatttctggagtgtgatccctactcgaattaggtcgtatca 141  Q
    ||||||| |||||||||||||||||||||||| ||||||||||    
T  36054030 ttaatttttggagtgtgatccctactcgaattgggtcgtatca 36054072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 104 - 142
Target Start/End: Complemental strand, 55322371 - 55322333
Alignment:
Q  104 ttctggagtgtgatccctactcgaattaggtcgtatcat 142  Q
    ||||||||||||||||||||||||||| |||||||||||    
T  55322371 ttctggagtgtgatccctactcgaattgggtcgtatcat 55322333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 19 - 68
Target Start/End: Original strand, 24733644 - 24733693
Alignment:
Q  19 atataatcattgtatgtttcatgattagactcaatgaaaaatataatgaa 68  Q
    |||||| ||||||||||||||||||||||   ||||||||||||||||||    
T  24733644 atataagcattgtatgtttcatgattagaaggaatgaaaaatataatgaa 24733693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 104 - 141
Target Start/End: Original strand, 27387733 - 27387770
Alignment:
Q  104 ttctggagtgtgatccctactcgaattaggtcgtatca 141  Q
    ||||||||||||||||||||||||||| ||||||||||    
T  27387733 ttctggagtgtgatccctactcgaattgggtcgtatca 27387770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 96 - 139
Target Start/End: Original strand, 12638115 - 12638158
Alignment:
Q  96 ctcttaatttctggagtgtgatccctactcgaattaggtcgtat 139  Q
    |||||||||||||||||| ||| |||||||||||| ||||||||    
T  12638115 ctcttaatttctggagtgcgatacctactcgaattgggtcgtat 12638158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 108 - 141
Target Start/End: Complemental strand, 10129665 - 10129632
Alignment:
Q  108 ggagtgtgatccctactcgaattaggtcgtatca 141  Q
    ||||||||||||||||||||||| ||||||||||    
T  10129665 ggagtgtgatccctactcgaattgggtcgtatca 10129632  T

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Target: chr8 (Bit Score: 35; Significance: 0.00000000009; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 104 - 142
Target Start/End: Original strand, 44762080 - 44762118
Alignment:
Q  104 ttctggagtgtgatccctactcgaattaggtcgtatcat 142  Q
    ||||||||||||||||||||||||||| |||||||||||    
T  44762080 ttctggagtgtgatccctactcgaattgggtcgtatcat 44762118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 104 - 141
Target Start/End: Original strand, 44765387 - 44765424
Alignment:
Q  104 ttctggagtgtgatccctactcgaattaggtcgtatca 141  Q
    ||||||||||| ||||||||||||||| ||||||||||    
T  44765387 ttctggagtgtaatccctactcgaattgggtcgtatca 44765424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.00000000009; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 100 - 142
Target Start/End: Complemental strand, 19798092 - 19798050
Alignment:
Q  100 taatttctggagtgtgatccctactcgaattaggtcgtatcat 142  Q
    ||||||||||||||||||||||||||||||  |||||||||||    
T  19798092 taatttctggagtgtgatccctactcgaatcgggtcgtatcat 19798050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 100 - 142
Target Start/End: Complemental strand, 19798337 - 19798295
Alignment:
Q  100 taatttctggagtgtgatccctactcgaattaggtcgtatcat 142  Q
    ||||||||||||| ||||||||||||||||| |||||||||||    
T  19798337 taatttctggagtctgatccctactcgaattgggtcgtatcat 19798295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 104 - 141
Target Start/End: Original strand, 36326603 - 36326640
Alignment:
Q  104 ttctggagtgtgatccctactcgaattaggtcgtatca 141  Q
    ||||||||||||||||||||||||||| ||||||||||    
T  36326603 ttctggagtgtgatccctactcgaattgggtcgtatca 36326640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 104 - 142
Target Start/End: Original strand, 1830902 - 1830940
Alignment:
Q  104 ttctggagtgtgatccctactcgaattaggtcgtatcat 142  Q
    ||||||||||||||||||||| ||||| |||||||||||    
T  1830902 ttctggagtgtgatccctacttgaattgggtcgtatcat 1830940  T

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Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 100 - 142
Target Start/End: Original strand, 18319509 - 18319551
Alignment:
Q  100 taatttctggagtgtgatccctactcgaattaggtcgtatcat 142  Q
    |||||||| |||||||||||||||||||||  |||||||||||    
T  18319509 taatttctagagtgtgatccctactcgaatcgggtcgtatcat 18319551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 104 - 141
Target Start/End: Original strand, 14029440 - 14029477
Alignment:
Q  104 ttctggagtgtgatccctactcgaattaggtcgtatca 141  Q
    ||||||||||||||||||||||||||| || |||||||    
T  14029440 ttctggagtgtgatccctactcgaattgggccgtatca 14029477  T

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Target: chr1 (Bit Score: 35; Significance: 0.00000000009; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 96 - 142
Target Start/End: Complemental strand, 18583931 - 18583885
Alignment:
Q  96 ctcttaatttctggagtgtgatccctactcgaattaggtcgtatcat 142  Q
    ||||||||||||||||||| ||| ||||||||||| |||||||||||    
T  18583931 ctcttaatttctggagtgtaatctctactcgaattgggtcgtatcat 18583885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 104 - 142
Target Start/End: Complemental strand, 23405512 - 23405474
Alignment:
Q  104 ttctggagtgtgatccctactcgaattaggtcgtatcat 142  Q
    ||||||||||||||||||||| ||||| |||||||||||    
T  23405512 ttctggagtgtgatccctacttgaattgggtcgtatcat 23405474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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