View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6332_low_19 (Length: 245)

Name: NF6332_low_19
Description: NF6332
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6332_low_19
NF6332_low_19
[»] chr3 (11 HSPs)
chr3 (1-205)||(9452941-9453143)
chr3 (16-162)||(9400940-9401083)
chr3 (1-159)||(9410763-9410918)
chr3 (1-166)||(9431768-9431931)
chr3 (12-115)||(9419466-9419569)
chr3 (1-103)||(9411997-9412099)
chr3 (13-93)||(9346457-9346537)
chr3 (13-93)||(9355867-9355947)
chr3 (49-116)||(9369002-9369069)
chr3 (119-174)||(9355952-9356008)
chr3 (121-174)||(9346544-9346598)
[»] chr5 (1 HSPs)
chr5 (5-174)||(10064006-10064172)
[»] chr7 (1 HSPs)
chr7 (121-160)||(18583959-18583998)


Alignment Details
Target: chr3 (Bit Score: 123; Significance: 3e-63; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 1 - 205
Target Start/End: Original strand, 9452941 - 9453143
Alignment:
Q  1 taacaacgaacaaataaagattctagcagagtacataaagagctgttctcaatcttctttatataaatcaaacattgcttctaattaagcatcttctgag 100  Q
    |||||||||||||||||||||| |||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  9452941 taacaacgaacaaataaagattttagcagagtacataaagagcagttttcaatcttctttatataaatcaaacattgcttctaattacgcatcttctgag 9453040  T
Q  101 ttctagacaccccttagcagctagtaaatcactcttagcctgttgtaaaccaaccccttgcagg-aatgttctgcnnnnnnncaagacaacaatggtcat 199  Q
    |||| ||||||||||    |||||| ||||||||||||||||||||| |||||||||||||||| ||||||||||       ||||||| |||||||||     
T  9453041 ttctggacacccctt---tgctagtcaatcactcttagcctgttgtacaccaaccccttgcaggaaatgttctgcaaaaaaacaagacagcaatggtcag 9453137  T
Q  200 aattat 205  Q
    ||||||    
T  9453138 aattat 9453143  T

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Target: chr3; HSP #2
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 16 - 162
Target Start/End: Original strand, 9400940 - 9401083
Alignment:
Q  16 aaagattctagcagagtacataaagagctgttctcaatcttctttatataaatcaaacattgcttctaattaagcatcttctgagttctagacacccctt 115  Q
    |||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||    
T  9400940 aaagattctagcagagtacataaagatctgttttcaatcttctttatataaatcaaacattgcttctaattaagcatcttctgagttctggacactcctt 9401039  T
Q  116 agcagctagtaaatcactcttagcctgttgtaaaccaaccccttgca 162  Q
       ||||||| ||||||||||||||||||||||||||||||||||||    
T  9401040 ---agctagttaatcactcttagcctgttgtaaaccaaccccttgca 9401083  T

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Target: chr3; HSP #3
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 1 - 159
Target Start/End: Original strand, 9410763 - 9410918
Alignment:
Q  1 taacaacgaacaaataaagattctagcagagtacataaagagctgttctcaatcttctttatataaatcaaacattgcttctaattaagcatcttctgag 100  Q
    |||||||| ||| ||||||||  |||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9410763 taacaacgtacacataaagatcatagcagagtacataaagatctgttttcaatcttctttatataaatcaaacattgcttctaattaagcatcttctgag 9410862  T
Q  101 ttctagacaccccttagcagctagtaaatcactcttagcctgttgtaaaccaacccctt 159  Q
    |||| ||||| ||||   ||||||| |||||||||||| |||||||||| |||||||||    
T  9410863 ttctggacactcctt---agctagttaatcactcttagtctgttgtaaaacaacccctt 9410918  T

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Target: chr3; HSP #4
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 1 - 166
Target Start/End: Original strand, 9431768 - 9431931
Alignment:
Q  1 taacaacgaacaaataaagattctagcagagtacataaagagctgttctcaatcttcttta-tataaatcaaacattgcttctaattaagcatcttctga 99  Q
    ||||||||||||||||||||| |||||| |||||||||||||| ||| ||||||| ||||| || |||| |||||||||||||||||||||||| |||||    
T  9431768 taacaacgaacaaataaagatactagcaaagtacataaagagcagttttcaatctactttattaaaaatgaaacattgcttctaattaagcatcgtctga 9431867  T
Q  100 gttctagacaccccttagcagctagtaaatcactcttagcctgttgtaaaccaaccccttgcaggaa 166  Q
    ||||  ||||||| ||     ||||| |||||||||||||||||||| ||||||||||||| |||||    
T  9431868 gttcaggacacccttt---ttctagtcaatcactcttagcctgttgtgaaccaaccccttgaaggaa 9431931  T

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Target: chr3; HSP #5
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 12 - 115
Target Start/End: Original strand, 9419466 - 9419569
Alignment:
Q  12 aaataaagattctagcagagtacataaagagctgttctcaatcttctttatataaatcaaacattgcttctaattaagcatcttctgagttctagacacc 111  Q
    ||||||||||||||||||||||||||   | ||||| ||||| |||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||    
T  9419466 aaataaagattctagcagagtacataggtatctgttttcaattttctttatataaatcaaacattgcttctaattaagcatattctgagttctggacacc 9419565  T
Q  112 cctt 115  Q
    ||||    
T  9419566 cctt 9419569  T

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Target: chr3; HSP #6
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 1 - 103
Target Start/End: Original strand, 9411997 - 9412099
Alignment:
Q  1 taacaacgaacaaataaagattctagcagagtacataaagagctgttctcaatcttctttatataaatcaaacattgcttctaattaagcatcttctgag 100  Q
    |||||||| | |||||||||||||||||||||||||| ||| ||||| ||||| |||||| ||||||||||||||||||||||| |||||||||||||||    
T  9411997 taacaacggagaaataaagattctagcagagtacatagagatctgttttcaattttctttctataaatcaaacattgcttctaactaagcatcttctgag 9412096  T
Q  101 ttc 103  Q
    |||    
T  9412097 ttc 9412099  T

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Target: chr3; HSP #7
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 13 - 93
Target Start/End: Original strand, 9346457 - 9346537
Alignment:
Q  13 aataaagattctagcagagtacataaagagctgttctcaatcttctttatataaatcaaacattgcttctaattaagcatc 93  Q
    |||||||||||||| |||||||| ||||||  ||| ||||||||||||||||| |||||||||||||||||||||||||||    
T  9346457 aataaagattctagtagagtacacaaagagaagttttcaatcttctttatatatatcaaacattgcttctaattaagcatc 9346537  T

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Target: chr3; HSP #8
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 13 - 93
Target Start/End: Original strand, 9355867 - 9355947
Alignment:
Q  13 aataaagattctagcagagtacataaagagctgttctcaatcttctttatataaatcaaacattgcttctaattaagcatc 93  Q
    |||||||||||||| |||||||| ||||||  ||| ||||||||||||||||| |||||||||||||||||||||||||||    
T  9355867 aataaagattctagtagagtacacaaagagaagttttcaatcttctttatatatatcaaacattgcttctaattaagcatc 9355947  T

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Target: chr3; HSP #9
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 49 - 116
Target Start/End: Original strand, 9369002 - 9369069
Alignment:
Q  49 tcaatcttctttatataaatcaaacattgcttctaattaagcatcttctgagttctagacacccctta 116  Q
    ||||||||||||||||||||| ||| |||||||||||||||||||||||||||||| |||||||||||    
T  9369002 tcaatcttctttatataaatcgaactttgcttctaattaagcatcttctgagttctggacacccctta 9369069  T

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Target: chr3; HSP #10
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 119 - 174
Target Start/End: Original strand, 9355952 - 9356008
Alignment:
Q  119 agctagtaaatcactcttagcctgttgtaaaccaaccccttgcagg-aatgttctgc 174  Q
    ||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||    
T  9355952 agctagtcaatcactcttagcctgttgtaaaccaaccccttgcaggaaatgttctgc 9356008  T

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Target: chr3; HSP #11
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 121 - 174
Target Start/End: Original strand, 9346544 - 9346598
Alignment:
Q  121 ctagtaaatcactcttagcctgttgtaaaccaaccccttgcagg-aatgttctgc 174  Q
    ||||| |||||||||||||||||||||||||||||||||||||| ||||||||||    
T  9346544 ctagtcaatcactcttagcctgttgtaaaccaaccccttgcaggaaatgttctgc 9346598  T

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Target: chr5 (Bit Score: 81; Significance: 3e-38; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 5 - 174
Target Start/End: Original strand, 10064006 - 10064172
Alignment:
Q  5 aacgaacaaataaagattctagcagagtacataaagagctgttctcaatcttctttatataaatcaaacattgcttctaattaagcatcttctgagttct 104  Q
    ||||||||||||||||||||||||| |||||||||||||||||  |||| || | |||| ||||||||  ||||||||||||||||||||| ||||||||    
T  10064006 aacgaacaaataaagattctagcagggtacataaagagctgtttccaat-ttttatataaaaatcaaatgttgcttctaattaagcatcttgtgagttct 10064104  T
Q  105 agacaccccttagcagctagtaaatcactcttagcctgttgtaaaccaaccccttgcagg-aatgttctgc 174  Q
     ||||||| ||   ||||||| ||||||||||| |||| ||||||||||| ||||||||| ||||||||||    
T  10064105 ggacacccttt---agctagtcaatcactcttatcctgctgtaaaccaactccttgcaggaaatgttctgc 10064172  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 121 - 160
Target Start/End: Complemental strand, 18583998 - 18583959
Alignment:
Q  121 ctagtaaatcactcttagcctgttgtaaaccaaccccttg 160  Q
    ||||| |||||||||||||||||||||||||||| |||||    
T  18583998 ctagtcaatcactcttagcctgttgtaaaccaactccttg 18583959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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