View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6332_low_2 (Length: 486)
Name: NF6332_low_2
Description: NF6332
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6332_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 277; Significance: 1e-155; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 186 - 466
Target Start/End: Original strand, 6221391 - 6221671
Alignment:
| Q |
186 |
tcaatttcggtatattcacttgccaaggtggcgtcaaaacaatgaatctttatactattataactgttctagcttaaaaaacaaaaggaacaaaatttta |
285 |
Q |
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| T |
6221391 |
tcaatttcggtatattcacttgccaaggtggcgtcaaaacaatgaatctttatactattataactgttctagcttaaaaaacaaaaggaacaaaatttta |
6221490 |
T |
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| Q |
286 |
atttgaccgaacaaaacaccaagcatcggattctgaccaatctaacggtctttcatttgtgactagtcgttgaagcctctcgcccggtgaacaaaaacct |
385 |
Q |
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| T |
6221491 |
atttgaccgaacaaaacaccaagcatcggattctgaccaatctaacggtctttcatttgtgactagtcgttgaagactctcgcccggtgaacaaaaacct |
6221590 |
T |
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| Q |
386 |
tgctcaaatttcagttcacatacttcctttgcatcaggaggcaaagtcgtaacactagaagaagcccaatgaggaaaatcg |
466 |
Q |
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| T |
6221591 |
tgctcaaatttcagttcacatacttcctttgcatcaggaggcaaagtcgtaacactagaagaagcccaatgaggaaaatcg |
6221671 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 7 - 125
Target Start/End: Original strand, 6221210 - 6221330
Alignment:
| Q |
7 |
catagtacctcttgaagatctttatcggtttatccttctggttaagatcttaaagttttgggaaca--attcatgtattgtttctgaaatgctgccaaag |
104 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
6221210 |
catagtacctcttgaagatctttatcggtttatccttctggttaagatcttaaagttttgggaacaatattcatgtattgtttctgaaatgctgccaaag |
6221309 |
T |
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| Q |
105 |
ttcattcataattattgcttg |
125 |
Q |
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| T |
6221310 |
ttcattcataattattgcttg |
6221330 |
T |
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