View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6332_low_24 (Length: 228)
Name: NF6332_low_24
Description: NF6332
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6332_low_24 |
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Alignment Details
Target: chr7 (Bit Score: 163; Significance: 3e-87; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 1 - 213
Target Start/End: Complemental strand, 24968460 - 24968246
Alignment:
| Q |
1 |
cttgaagctgatattcaatttgctaatacactgtaattaatcattcctttcatcacnnnnnnnnnnn--gtttatgaatattgatttatatgatttttga |
98 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| | ||||||| ||||||||||||||||||||||||||||||| |
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| T |
24968460 |
cttgaagctgatattcaatttgctaatacactgtaattaatcattcttctcatcacattttttttttttgtttatgaatattgatttatatgatttttga |
24968361 |
T |
|
| Q |
99 |
tactacccaattaggaaattacttgctttttaagtaaaatgatatttaatgattggtggaacattgtattatagaactatataatataattatgtttgtg |
198 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24968360 |
tactacccaattaggaaattacttgctttttaagtaaaatgatatttaatgattggtggaacattgtattatagaactatataatataattatgtttgtg |
24968261 |
T |
|
| Q |
199 |
tattgtttattcgat |
213 |
Q |
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||||||||||||||| |
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| T |
24968260 |
tattgtttattcgat |
24968246 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 4686648 - 4686613
Alignment:
| Q |
1 |
cttgaagctgatattcaatttgctaatacactgtaa |
36 |
Q |
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||||||||||||||||||||||| |||||||||||| |
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| T |
4686648 |
cttgaagctgatattcaatttgccaatacactgtaa |
4686613 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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