View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6332_low_6 (Length: 395)
Name: NF6332_low_6
Description: NF6332
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6332_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 205; Significance: 1e-112; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 20 - 313
Target Start/End: Complemental strand, 1918119 - 1917815
Alignment:
| Q |
20 |
gagttagtcatagtcatattgagtatgtgtataactttcttttctttgnnnnnnngcatttattcataggaaattagtgatgaagccattcttaaagatg |
119 |
Q |
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| T |
1918119 |
gagttagtcatagtcatattgagtatgtgtataactttcttttctttgtttttttgcatttattcataggaaataagtgatgaagccattcttaaagatg |
1918020 |
T |
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| Q |
120 |
gagaatctgaatctgtatgtga---------------agatcagattggagatcccaaagacaatacaaaggaaaacaatgagaaggagatcacagagat |
204 |
Q |
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| T |
1918019 |
gagaatctgaatctgtatgtgatgatgattattgtgaagatcagattggagatcccacagacaatacaaaggaaaacaatgagaaggagatcacagagat |
1917920 |
T |
|
| Q |
205 |
gttgaaggaactttcagacgttatgggcttaaagaaggttcgtaattaaattaaatatatttagttaaattatggtttgattcccttgcatatgttttac |
304 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||| |||| |
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| T |
1917919 |
gttgaaggaactttcagacgttatgggcttaaagaaggttcgtaattaaattaaata----tagttaaattatggtttgatttccttgcatatgtcttac |
1917824 |
T |
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| Q |
305 |
tagcttctt |
313 |
Q |
| |
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||||||||| |
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| T |
1917823 |
tagcttctt |
1917815 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 22 - 260
Target Start/End: Complemental strand, 1872087 - 1871841
Alignment:
| Q |
22 |
gttagtcatagtcatattgagtatgtgtataactttcttttctttgnnnnnnngcatttattcataggaaattagtgatgaagccattcttaaagatgga |
121 |
Q |
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| T |
1872087 |
gttagtcatagtcatattgaatatgagtataactctcttttctttgttgtttt-catttatacataggaaatacatgataaagtcatttttgaagatgga |
1871989 |
T |
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| Q |
122 |
gaatctgaatctgtatgtgaagat---------cagattggagatcccaaagacaatacaaaggaaaacaatgagaaggagatcacagagatgttgaagg |
212 |
Q |
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| T |
1871988 |
gaatctgaatctgtgtgtggtgatgatgagtatcaaattggagatcccacagatattacaaaggaaagcaatgagaaggagataacacagagattgaaag |
1871889 |
T |
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| Q |
213 |
aactttcagacgttatgggcttaaagaaggttcgtaattaaattaaat |
260 |
Q |
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|||||||||| || || ||||||||||||||| ||||||||||||||| |
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| T |
1871888 |
aactttcagatgtcataggcttaaagaaggttggtaattaaattaaat |
1871841 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 332 - 387
Target Start/End: Original strand, 53650995 - 53651046
Alignment:
| Q |
332 |
tcaatcatctaatgaaatctcactcaattacttactttcacgcattcattctctgc |
387 |
Q |
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| T |
53650995 |
tcaatcatctaattaaatctcactcaa----ttactttcacgcattcattctctgc |
53651046 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 183; Significance: 7e-99; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 183; E-Value: 7e-99
Query Start/End: Original strand, 20 - 263
Target Start/End: Complemental strand, 17491165 - 17490931
Alignment:
| Q |
20 |
gagttagtcatagtcatattgagtatgtgtataactttcttttctttgnnnnnnngcatttattcataggaaattagtgatgaagccattcttaaagatg |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
17491165 |
gagttagtcatagtcatattgagtatgtgtataactttcttttctttgtttttttgcatttattcataggaaataagtgatgaagccattcttaaagatg |
17491066 |
T |
|
| Q |
120 |
gagaatctgaatctgtatgtgaagatcagattggagatcccaaagacaatacaaaggaaaacaatgagaaggagatcacagagatgttgaaggaactttc |
219 |
Q |
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| T |
17491065 |
gagaatctgaatctgtatgtgaagatcagattggagatcccacagacaatacaaaggaaaacaatgagaagg---------agatgttgaaggaactttc |
17490975 |
T |
|
| Q |
220 |
agacgttatgggcttaaagaaggttcgtaattaaattaaatata |
263 |
Q |
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| T |
17490974 |
agacgttatgggcttaaagaaggttcgtaattaaattaaatata |
17490931 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 183; E-Value: 7e-99
Query Start/End: Original strand, 20 - 263
Target Start/End: Original strand, 17562049 - 17562283
Alignment:
| Q |
20 |
gagttagtcatagtcatattgagtatgtgtataactttcttttctttgnnnnnnngcatttattcataggaaattagtgatgaagccattcttaaagatg |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
17562049 |
gagttagtcatagtcatattgagtatgtgtataactttcttttctttgtttttttgcatttattcataggaaataagtgatgaagccattcttaaagatg |
17562148 |
T |
|
| Q |
120 |
gagaatctgaatctgtatgtgaagatcagattggagatcccaaagacaatacaaaggaaaacaatgagaaggagatcacagagatgttgaaggaactttc |
219 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
17562149 |
gagaatctgaatctgtatgtgaagatcagattggagatcccacagacaatacaaaggaaaacaatgagaag---------gagatgttgaaggaactttc |
17562239 |
T |
|
| Q |
220 |
agacgttatgggcttaaagaaggttcgtaattaaattaaatata |
263 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17562240 |
agacgttatgggcttaaagaaggttcgtaattaaattaaatata |
17562283 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 288 - 387
Target Start/End: Complemental strand, 17490930 - 17490826
Alignment:
| Q |
288 |
ccttgcatatgttttactagcttcttaaggctgagattaaaaat---------tcaatcatctaatgaaatctcactcaattacttactttcacgcattc |
378 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
17490930 |
ccttgcatatgtcttactagcttcttaaggctgagattaaaaattaccttgtgtcaatcatctaatgaaatctcactcaa----ttactttcacgcattc |
17490835 |
T |
|
| Q |
379 |
attctctgc |
387 |
Q |
| |
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||||||||| |
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| T |
17490834 |
attctctgc |
17490826 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 288 - 387
Target Start/End: Original strand, 17562284 - 17562388
Alignment:
| Q |
288 |
ccttgcatatgttttactagcttcttaaggctgagattaaaaat---------tcaatcatctaatgaaatctcactcaattacttactttcacgcattc |
378 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
17562284 |
ccttgcatatgtcttactagcttcttaaggctgagattaaaaattaccttgtgtcaatcatctaatgaaatctcactcaa----ttactttcacgcattc |
17562379 |
T |
|
| Q |
379 |
attctctgc |
387 |
Q |
| |
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||||||||| |
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|
| T |
17562380 |
attctctgc |
17562388 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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