View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6332_low_7 (Length: 375)
Name: NF6332_low_7
Description: NF6332
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6332_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 237; Significance: 1e-131; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 21 - 265
Target Start/End: Complemental strand, 40208325 - 40208081
Alignment:
| Q |
21 |
ttcatgtgacatggatcttttccaccacttctatggaaacaatttgacctttcaattgccctgtttcatacagaattaaccaaagtcaattataccatat |
120 |
Q |
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| T |
40208325 |
ttcatgtgacatggatcttttccaccacttctatggaaacaatttgacctttcaattgccctgtttcatacagaattaaccaaagttaattataccatat |
40208226 |
T |
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| Q |
121 |
tctttggatattttcttcaatgaaattaactaaatgattaagatctcaattaaacttacatcatgcttatggcagaagctatagtgtatccaatggcaac |
220 |
Q |
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| T |
40208225 |
tctttggatattttcttcaatgaaattaactaaatgattaagatctcaattaaacttacatcatgcttatggcagaagctatagtgtatccaatggcaac |
40208126 |
T |
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| Q |
221 |
tccaacaaggtttagatactgaactatcccacataacgtgacttg |
265 |
Q |
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| T |
40208125 |
tcctacaaggtttagatactgaactatcccacataacgtgacttg |
40208081 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 21 - 265
Target Start/End: Complemental strand, 40200691 - 40200447
Alignment:
| Q |
21 |
ttcatgtgacatggatcttttccaccacttctatggaaacaatttgacctttcaattgccctgtttcatacagaattaaccaaagtcaattataccatat |
120 |
Q |
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| T |
40200691 |
ttcatgtgacatggatcttttcccccacttctatggaaacaatttgacctttcaattgccctgtttcatacaaaattaaccaaagtcaattctacaatat |
40200592 |
T |
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| Q |
121 |
tctttggatattttcttcaatgaaattaactaaatgattaagatctcaattaaacttacatcatgcttatggcagaagctatagtgtatccaatggcaac |
220 |
Q |
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| T |
40200591 |
tccttggatattttcttggatgaaattaactatatgattaagatctcaattaaacttacatcatgcttatggcagaagctatagtgtatccaatggcagc |
40200492 |
T |
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| Q |
221 |
tccaacaaggtttagatactgaactatcccacataacgtgacttg |
265 |
Q |
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| T |
40200491 |
ccccgcaagattgagatactgaactatcccacataacgtgacttg |
40200447 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 18 - 265
Target Start/End: Complemental strand, 40204195 - 40203947
Alignment:
| Q |
18 |
ctattcatgtgacatggatcttttccaccacttctatggaaacaatttgacctttcaattgccctgtttcatacagaattaaccaaagtcaattatacca |
117 |
Q |
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| T |
40204195 |
ctattcatgtgacatggatcttttccaccacttctatggaaacaatttgacctttcaattgccctgtttcatacaaaattaaccaaagtcaattctacca |
40204096 |
T |
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| Q |
118 |
tattctttggatattttcttcaatgaaattaact-----aaatgattaagatctcaattaaacttacatcatgcttatggcagaagctatagtgtatcca |
212 |
Q |
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| T |
40204095 |
tattccttggatattttcttgaataaaattaactttaaaatatgaataagatctc----aaacttacatcatgcttatggctgaggctatagtgtatcca |
40204000 |
T |
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| Q |
213 |
atggcaactccaacaaggtttagatactgaactatcccacataacgtgacttg |
265 |
Q |
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| T |
40203999 |
atggcaactccaacaaggttgagatactgaactatcccacataacgtgacttg |
40203947 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 329 - 371
Target Start/End: Complemental strand, 40208017 - 40207975
Alignment:
| Q |
329 |
gaatttgcttttctttatatatattcacagagaataatctacc |
371 |
Q |
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| T |
40208017 |
gaatttgcttttctttatatatattcacagagaagaatttacc |
40207975 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 20 - 82
Target Start/End: Original strand, 10299381 - 10299443
Alignment:
| Q |
20 |
attcatgtgacatggatcttttccaccacttctatggaaacaatttgacctttcaattgccct |
82 |
Q |
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| T |
10299381 |
attcatgtggcatggattttttccaccactgctgtggaaacaattagaccttttaattgccct |
10299443 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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