View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6332_low_8 (Length: 311)
Name: NF6332_low_8
Description: NF6332
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6332_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 267; Significance: 1e-149; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 28 - 294
Target Start/End: Complemental strand, 10992278 - 10992012
Alignment:
| Q |
28 |
acctgtgttgactagagccgttgatgaacctacaaaatcatactagccaaacttagtttatgtcattgattgattgtaaaagatacttaatgttaaagag |
127 |
Q |
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| T |
10992278 |
acctgtgttgactagagccgttgatgaacctacaaaatcatactagccaaacttagtttatgtcattgattgattgtaaaagatacttaatgttaaagag |
10992179 |
T |
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| Q |
128 |
tcccacatcagacaaaattgatagaacaaattgagagaaagtgaagaaacttataagtgcagggttttagaagattagagagaaacagaaaaatttaaaa |
227 |
Q |
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| T |
10992178 |
tcccacatcagacaaaattgatagaacaaattgagagaaagtgaagaaacttataagtgcagggttttagaagattagagagaaacagaaaaatttaaaa |
10992079 |
T |
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| Q |
228 |
caaactttattgacttgagaatataatgcttctcatattattaatcagcaactaggcataggtattt |
294 |
Q |
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| T |
10992078 |
caaactttattgacttgagaatataatgcttctcatattattaatcagcaactaggcataggtattt |
10992012 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 28 - 114
Target Start/End: Complemental strand, 11040437 - 11040351
Alignment:
| Q |
28 |
acctgtgttgactagagccgttgatgaacctacaaaatcatactagccaaacttagtttatgtcattgattgattgtaaaagatact |
114 |
Q |
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| T |
11040437 |
acctgtgtttactagagcctttgatgaacctgcaaaatcatactagctaacattagcttatgttattgattgattgtaaaagatact |
11040351 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 28 - 112
Target Start/End: Complemental strand, 11025733 - 11025649
Alignment:
| Q |
28 |
acctgtgttgactagagccgttgatgaacctacaaaatcatactagccaaacttagtttatgtcattgattgattgtaaaagata |
112 |
Q |
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| T |
11025733 |
acctgtgttcactagagcctttgatgaacctgcaaaatcatactagctagccttagcttatgtcattgattgattgtaaaggata |
11025649 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 52; Significance: 8e-21; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 139 - 269
Target Start/End: Original strand, 12748105 - 12748235
Alignment:
| Q |
139 |
acaaaattgatagaacaaattgagagaaagtgaagaaacttataagtgcagggttttagaagattagagagaaacagaa-aaatttaaaacaaactttat |
237 |
Q |
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||||| |||||||||||||| |||||||||||||||||| ||||| |||| ||||| |||||| | |||| ||||||| || | |||| ||||||||| |
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| T |
12748105 |
acaaatttgatagaacaaatagagagaaagtgaagaaacatataaatgcaaggtttgagaagaccaaagag-aacagaagaactgaaaaataaactttat |
12748203 |
T |
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| Q |
238 |
tgacttgagaatataatgcttctcatattatt |
269 |
Q |
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| T |
12748204 |
taacttgagaatataatacttcttatattatt |
12748235 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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