View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6332_low_9 (Length: 310)

Name: NF6332_low_9
Description: NF6332
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6332_low_9
NF6332_low_9
[»] chr3 (1 HSPs)
chr3 (16-310)||(361376-361670)


Alignment Details
Target: chr3 (Bit Score: 263; Significance: 1e-146; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 16 - 310
Target Start/End: Original strand, 361376 - 361670
Alignment:
Q  16 attgtaaccgaaaaactacatgtgaaaatttcgtgtcattattttcgaacactagacatatcttcaatatgatttgtgatgtgtcaatgctaaattgtta 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  361376 attgtaaccgaaaaactacatgtgaaaatttcgtgtcattattttccaacactagacatatcttcaatatgatttgtgatgtgtcaatgctaaattgtta 361475  T
Q  116 ggtagctaattagttggaacatatacacttcattatggtctccgacactaatacgacaactatatacacatgtgattatattcaataaatttctaacatt 215  Q
    |||||||||||||||| |||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  361476 ggtagctaattagttgaaacatatacacttcatcatggtctccaacactaatacgacaactatatacacatgtgattatattcaataaatttttaacatt 361575  T
Q  216 attactagtgtccatatgttagtgtaccctaccgacacacgtgattacatccttaactcatgttctcgatttgttaccagtggtgatgtgttttc 310  Q
    ||||| |||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  361576 attacaagtgtccatatgttagtgtaccataccgatacacgtgattacatccttaactcatgttctcgatttgttaccagtggtgatgtgttttc 361670  T

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