View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6333_high_4 (Length: 303)
Name: NF6333_high_4
Description: NF6333
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6333_high_4 |
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Alignment Details
Target: chr8 (Bit Score: 288; Significance: 1e-161; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 1 - 292
Target Start/End: Complemental strand, 20141017 - 20140726
Alignment:
| Q |
1 |
aacaccttcatcatctcttcctcctcaaacaaatgaatgttcttcttattggtcactctatgatgatctttatcatgatacactctacgcagattctgaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20141017 |
aacaccttcatcatctcttcctcctcaaacaaatgaatgttcttcttattggtcactctatgatgatctttatcatgatacactctacgcagattctgaa |
20140918 |
T |
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| Q |
101 |
gctcatcatcatcttcaacagggacaagaacagaccaacgaggaagagattagaactggggttgttgatgttccaccagaagccaagaagagaaaggtta |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20140917 |
gctcatcatcatcttcaacagggacaagaacagaccaacgaggaagagattagaactggggttgttgatgttccaccagaagccaagaagagaaaggtta |
20140818 |
T |
|
| Q |
201 |
atgggtcattgagttcacatttagccacaggaaaatggactcttagtagagaacaaggaagtaagttactagcaagacaatttcgtgatgat |
292 |
Q |
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| T |
20140817 |
atgggtcattgagttcacatttagctacaggaaaatggactcttagtagagaacaaggaagtaagttactagcaagacaatttcgtgatgat |
20140726 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 288; Significance: 1e-161; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 1 - 292
Target Start/End: Complemental strand, 44318432 - 44318141
Alignment:
| Q |
1 |
aacaccttcatcatctcttcctcctcaaacaaatgaatgttcttcttattggtcactctatgatgatctttatcatgatacactctacgcagattctgaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44318432 |
aacaccttcatcatctcttcctcctcaaacaaatgaatgttcttcttattggtcactctatgatgatctttatcatgatacactctacgcagattctgaa |
44318333 |
T |
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| Q |
101 |
gctcatcatcatcttcaacagggacaagaacagaccaacgaggaagagattagaactggggttgttgatgttccaccagaagccaagaagagaaaggtta |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44318332 |
gctcatcatcatcttcaacagggacaagaacagaccaacgaggaagagattagaactggggttgttgatgttccaccagaagccaagaagagaaaggtta |
44318233 |
T |
|
| Q |
201 |
atgggtcattgagttcacatttagccacaggaaaatggactcttagtagagaacaaggaagtaagttactagcaagacaatttcgtgatgat |
292 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44318232 |
atgggtcattgagttcacatttagctacaggaaaatggactcttagtagagaacaaggaagtaagttactagcaagacaatttcgtgatgat |
44318141 |
T |
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