View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6333_low_10 (Length: 225)

Name: NF6333_low_10
Description: NF6333
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6333_low_10
NF6333_low_10
[»] chr3 (7 HSPs)
chr3 (112-209)||(2483980-2484077)
chr3 (112-182)||(7340176-7340246)
chr3 (112-209)||(7438889-7438986)
chr3 (1-54)||(2484135-2484188)
chr3 (1-54)||(7340067-7340120)
chr3 (167-209)||(2632074-2632116)
chr3 (4-54)||(7438787-7438836)


Alignment Details
Target: chr3 (Bit Score: 94; Significance: 5e-46; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 112 - 209
Target Start/End: Complemental strand, 2484077 - 2483980
Alignment:
Q  112 gtattcctatcttgtgggtctcgttcgatgattaaacccaacgaaactcttactatcctaagtggagatgcaactcacatgtactatgagccatatat 209  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  2484077 gtattcctatcttgtgggtctcgttcgatgattaaacccaacgaaactcttattatcctaagtggagatgcaactcacatgtactatgagccatatat 2483980  T

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Target: chr3; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 112 - 182
Target Start/End: Original strand, 7340176 - 7340246
Alignment:
Q  112 gtattcctatcttgtgggtctcgttcgatgattaaacccaacgaaactcttactatcctaagtggagatgc 182  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||    
T  7340176 gtattcctatcttgtgggtctcgttcgatgattaaacccaacaaaactcttattatcctaagtggagatgc 7340246  T

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Target: chr3; HSP #3
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 112 - 209
Target Start/End: Original strand, 7438889 - 7438986
Alignment:
Q  112 gtattcctatcttgtgggtctcgttcgatgattaaacccaacgaaactcttactatcctaagtggagatgcaactcacatgtactatgagccatatat 209  Q
    |||||||||||||||||||||| ||| || |||||||||||  |||||| || |||||||||| |||||||||||||||||| |||||||||||||||    
T  7438889 gtattcctatcttgtgggtctcattcaataattaaacccaataaaactcctattatcctaagtagagatgcaactcacatgtcctatgagccatatat 7438986  T

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Target: chr3; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 2484188 - 2484135
Alignment:
Q  1 gtcaaatcatctagcaatactaaactagcattgctagaaaggttacttaatatt 54  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2484188 gtcaaatcatctagcaatactaaactagcattgctagaaaggttacttaatatt 2484135  T

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Target: chr3; HSP #5
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 7340067 - 7340120
Alignment:
Q  1 gtcaaatcatctagcaatactaaactagcattgctagaaaggttacttaatatt 54  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  7340067 gtcaaatcatctagcaatactaaactagcattgctaaaaaggttacttaatatt 7340120  T

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Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 167 - 209
Target Start/End: Complemental strand, 2632116 - 2632074
Alignment:
Q  167 tcctaagtggagatgcaactcacatgtactatgagccatatat 209  Q
    |||| |||||||||||||||||| |||||||||||||||||||    
T  2632116 tcctgagtggagatgcaactcacttgtactatgagccatatat 2632074  T

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Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 4 - 54
Target Start/End: Original strand, 7438787 - 7438836
Alignment:
Q  4 aaatcatctagcaatactaaactagcattgctagaaaggttacttaatatt 54  Q
    |||||| ||| ||||||||||||||||||||||| ||||||||||||||||    
T  7438787 aaatcagctaccaatactaaactagcattgctag-aaggttacttaatatt 7438836  T

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