View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6333_low_3 (Length: 404)
Name: NF6333_low_3
Description: NF6333
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6333_low_3 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 253; Significance: 1e-140; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 11 - 391
Target Start/End: Complemental strand, 35184133 - 35183753
Alignment:
| Q |
11 |
cacagagtcgtttgacatcttccgatttgatccatttgggtcagggagatataggttcttccagtgattccaatagcatccaaagctatagatatgatgt |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35184133 |
cacagagtcgtttgacatcttccgatttgatccatttgggtcagggagatataggttcttccagtgattccaatagcatccaaagctatagatatgatgt |
35184034 |
T |
|
| Q |
111 |
gtttatcagtttccgtggtgctgacacccgcaacacttttgttgatcatctttatgctcatctaaaaagaaagggtatttttgccttcaaggatgatcaa |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||| || ||||||||||| || ||||||||||| || |
|
|
| T |
35184033 |
gtttatcagtttccgtggtgctgacacccgcagcacttttgttgatcatcttcatgctcatctaacaactaagggtattttcgctttcaaggatgacaaa |
35183934 |
T |
|
| Q |
211 |
aggcttgagaaaggagaatccctttcaccgcaacttctacaagcaattcaaagttcaagaatttctattgttgtcttctctcaaagatatgccgattcaa |
310 |
Q |
| |
|
|| ||||| ||||||||||||||||| ||||||||||||||||||||||||||||| | ||||||||||||||||||||| ||| ||||| || |||| |
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|
| T |
35183933 |
agacttgaaaaaggagaatccctttcgccgcaacttctacaagcaattcaaagttctcggatttctattgttgtcttctctaaaaattatgcggagtcaa |
35183834 |
T |
|
| Q |
311 |
cgtggtgtttggaagagatggctactattgctgaatgccatgaaaaattgaaacaaactgttttccctggtttttatgatg |
391 |
Q |
| |
|
| | ||||||||||||||||| ||||||||||||| ||| | |||||||||| |||||||||||| ||||||||||| |
|
|
| T |
35183833 |
cattatgtttggaagagatggccactattgctgaatatcatacagaattgaaacagactgttttccctattttttatgatg |
35183753 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 91 - 404
Target Start/End: Complemental strand, 35106104 - 35105790
Alignment:
| Q |
91 |
caaagctatagatatgatgtgtttatcagtttccgtggtgctgacacccgcaacacttttgttgatcatctttatgctcatctaaaaagaaagggtattt |
190 |
Q |
| |
|
|||||||||||||| || ||||||||||||||| | ||| | ||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35106104 |
caaagctatagatacgacgtgtttatcagtttcagaggtccagacacgcgcaacacttttgtcgatcatctttatgctcatctaaaaagaaagggtattt |
35106005 |
T |
|
| Q |
191 |
ttgccttcaaggatgatcaaaggcttgagaaaggagaatccctttcaccgcaacttctacaagcaattcaaagttcaagaatttctattgttgtcttctc |
290 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||| ||| | ||||||||||||||||||| |
|
|
| T |
35106004 |
ttgccttcaaggatgatcaaaggcttgagaaaggagaatccctttcgccgcaacttcttcaagcaattcaaaattctcgggtttctattgttgtcttctc |
35105905 |
T |
|
| Q |
291 |
tcaaagatatgccgattcaacgtggtgtttggaagagatggctactattgctgaatgccatgaaaaattgaaacaaactgttttccctggtttttatgat |
390 |
Q |
| |
|
| ||||||||||||| ||||| |||||||||||||||||||||||| |||||||||||| | ||| ||||||||||||||||||||||| |||||||||| |
|
|
| T |
35105904 |
tgaaagatatgccgagtcaacatggtgtttggaagagatggctactgttgctgaatgccgtaaaagattgaaacaaactgttttccctgttttttatgat |
35105805 |
T |
|
| Q |
391 |
gatg-tccatctcat |
404 |
Q |
| |
|
| || |||||||||| |
|
|
| T |
35105804 |
gttgatccatctcat |
35105790 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 64 - 390
Target Start/End: Complemental strand, 35178082 - 35177756
Alignment:
| Q |
64 |
ggttcttccagtgattccaatagcatccaaagctatagatatgatgtgtttatcagtttccgtggtgctgacacccgcaacacttttgttgatcatcttt |
163 |
Q |
| |
|
|||||||||| |||||||| | | | || ||||||| ||| || ||||||||||||||| | ||| | ||||||||||||||||||||||||||||||| |
|
|
| T |
35178082 |
ggttcttccattgattccagtggagtgcatagctataaatacgacgtgtttatcagtttcagaggtccagacacccgcaacacttttgttgatcatcttt |
35177983 |
T |
|
| Q |
164 |
atgctcatctaaaaagaaagggtatttttgccttcaaggatgatcaaaggcttgagaaaggagaatccctttcaccgcaacttctacaagcaattcaaag |
263 |
Q |
| |
|
|||||||||||| |||||| ||||||||||| |||||||||||| ||||||| ||||||||||||| |||||| | |||||||| |||||||||| || |
|
|
| T |
35177982 |
atgctcatctaacaagaaaaggtatttttgcgttcaaggatgataaaaggctcgagaaaggagaatgcctttcgctgcaacttcgacaagcaattgcaaa |
35177883 |
T |
|
| Q |
264 |
ttcaagaatttctattgttgtcttctctcaaagatatgccgattcaacgtggtgtttggaagagatggctactattgctgaatgccatgaaaaattgaaa |
363 |
Q |
| |
|
|||| | || ||||| ||||||||||| |||||||||| || ||||| |||||||||||||| ||||||||||||| |||||| | | || || | |
|
|
| T |
35177882 |
ttcacggatatctatcgttgtcttctcagaaagatatgctgagtcaacatggtgtttggaagaaatggctactattgttgaatgtcgtagcaatttctta |
35177783 |
T |
|
| Q |
364 |
caaactgttttccctggtttttatgat |
390 |
Q |
| |
|
|||||||||||||||| |||||||||| |
|
|
| T |
35177782 |
caaactgttttccctgttttttatgat |
35177756 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 131; E-Value: 8e-68
Query Start/End: Original strand, 95 - 345
Target Start/End: Complemental strand, 35169760 - 35169510
Alignment:
| Q |
95 |
gctatagatatgatgtgtttatcagtttccgtggtgctgacacccgcaacacttttgttgatcatctttatgctcatctaaaaagaaagggtatttttgc |
194 |
Q |
| |
|
|||||| ||| |||||||||||||||||| | || ||||||||||| |||||||||||||||||||||||||||||||||| ||||||||| |||| || |
|
|
| T |
35169760 |
gctataaatacgatgtgtttatcagtttcagaggcgctgacacccgtaacacttttgttgatcatctttatgctcatctaactagaaagggtgttttcgc |
35169661 |
T |
|
| Q |
195 |
cttcaaggatgatcaaaggcttgagaaaggagaatccctttcaccgcaacttctacaagcaattcaaagttcaagaatttctattgttgtcttctctcaa |
294 |
Q |
| |
|
||||||||||||| ||||||| ||||||||||||| | ||||| |||||| || |||||||||| || |||| | |||||||||||||||||||| || |
|
|
| T |
35169660 |
cttcaaggatgataaaaggctagagaaaggagaatgcttttcaacgcaacatcgacaagcaattacaaattcacggatttctattgttgtcttctcagaa |
35169561 |
T |
|
| Q |
295 |
agatatgccgattcaacgtggtgtttggaagagatggctactattgctgaa |
345 |
Q |
| |
|
|||||||| || ||||| |||||||||||||| |||||||| |||| |||| |
|
|
| T |
35169560 |
agatatgctgagtcaacatggtgtttggaagaaatggctaccattgttgaa |
35169510 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 109 - 391
Target Start/End: Complemental strand, 35055173 - 35054891
Alignment:
| Q |
109 |
gtgtttatcagtttccgtggtgctgacacccgcaacacttttgttgatcatctttatgctcatctaaaaagaaagggtatttttgccttcaaggatgatc |
208 |
Q |
| |
|
||||| |||||||| | ||| ||||||| ||||| | ||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||| |
|
|
| T |
35055173 |
gtgttcatcagttttagaggtcctgacactcgcaatagttttgttgatcatctttatgctcatctaacaagaaaaggtatttttgccttcaaggatgaca |
35055074 |
T |
|
| Q |
209 |
aaaggcttgagaaaggagaatccctttcaccgcaacttctacaagcaattcaaagttcaagaatttctattgttgtcttctctcaaagatatgccgattc |
308 |
Q |
| |
|
|||| |||||||||||||||| |||||||||| |||||||||||||||| || ||| |||||| |||||||||||||||| ||| ||||||||| || |
|
|
| T |
35055073 |
aaagtcttgagaaaggagaatttatttcaccgcagcttctacaagcaattcgaaattcgcgaatttttattgttgtcttctctaaaacatatgccgaatc |
35054974 |
T |
|
| Q |
309 |
aacgtggtgtttggaagagatggctactattgctgaatgccatgaaaaattgaaacaaactgttttccctggtttttatgatg |
391 |
Q |
| |
|
||| ||||||||||||||||||||| | |||||||| || ||| | || |||||||| ||||||||| ||||||||||| |
|
|
| T |
35054973 |
aacttggtgtttggaagagatggctgcaattgctgattgttgtgagtatttcaaacaaacagttttccctattttttatgatg |
35054891 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 104 - 210
Target Start/End: Complemental strand, 35047128 - 35047022
Alignment:
| Q |
104 |
atgatgtgtttatcagtttccgtggtgctgacacccgcaacacttttgttgatcatctttatgctcatctaaaaagaaagggtatttttgccttcaagga |
203 |
Q |
| |
|
|||||||||||||||||||| | || | ||||| ||||||||||| | |||||||| ||| |||||| | ||||| ||||| | || ||||||||| |
|
|
| T |
35047128 |
atgatgtgtttatcagtttcagaggcaccgacactcgcaacactttcatcgatcatctctatcatcatctcatcagaaaaggtatctctgtcttcaagga |
35047029 |
T |
|
| Q |
204 |
tgatcaa |
210 |
Q |
| |
|
||||||| |
|
|
| T |
35047028 |
tgatcaa |
35047022 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 77; Significance: 1e-35; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 76 - 339
Target Start/End: Original strand, 25484251 - 25484514
Alignment:
| Q |
76 |
gattccaatagcatccaaagctatagatatgatgtgtttatcagtttccgtggtgctgacacccgcaacacttttgttgatcatctttatgctcatctaa |
175 |
Q |
| |
|
||||| ||||||| ||||||||||||||| |||||||| ||||||||| | ||| |||||||||| || | |||||||| ||||| || |||||||| | |
|
|
| T |
25484251 |
gattctaatagcaaccaaagctatagatacgatgtgttcatcagtttcagaggttctgacacccgtaattcctttgttgaccatctctacgctcatctca |
25484350 |
T |
|
| Q |
176 |
aaagaaagggtatttttgccttcaaggatgatcaaaggcttgagaaaggagaatccctttcaccgcaacttctacaagcaattcaaagttcaagaatttc |
275 |
Q |
| |
|
| ||||| |||||||| ||||||||||||| | ||| ||||||||||| || ||||||| ||||||||||||||||||||| ||| | ||||| |
|
|
| T |
25484351 |
atagaaaaggtattttcaccttcaaggatgacaagcagctacagaaaggagaagccatttcaccccaacttctacaagcaattcaacagtcacgcatttc |
25484450 |
T |
|
| Q |
276 |
tattgttgtcttctctcaaaga-tatgccgattcaacgtggtgtttggaagagatggctactatt |
339 |
Q |
| |
|
||| ||||| ||||| |||||| ||||| |||||| ||||||||||| || |||||| ||||| |
|
|
| T |
25484451 |
tatcgttgttttctc-caaagattatgcttcttcaacatggtgtttggatgaaatggctgctatt |
25484514 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 94 - 346
Target Start/End: Original strand, 25636510 - 25636762
Alignment:
| Q |
94 |
agctatagatatgatgtgtttatcagtttccgtggtgctgacacccgcaacacttttgttgatcatctttatgctcatctaaaaagaaagggtatttttg |
193 |
Q |
| |
|
||||||| ||||||||| |||||||||||| | ||| |||||||||||||||| |||||||| ||||| ||||||||||| | ||||| ||||||| |
|
|
| T |
25636510 |
agctataaatatgatgtatttatcagtttcagaggtcctgacacccgcaacacctttgttgaccatctctatgctcatctcactagaaaaggtatttcga |
25636609 |
T |
|
| Q |
194 |
ccttcaaggatgatcaaaggcttgagaaaggagaatccctttcaccgcaacttctacaagcaattcaaagttcaagaatttctattgttgtcttctctca |
293 |
Q |
| |
|
||||||||||||| || |||| ||||||| |||||| |||||| |||||| | || |||||| || ||| | ||||||| |||||||||| || |
|
|
| T |
25636610 |
ccttcaaggatgacaaatcgcttcagaaaggcgaatccatttcactccaacttttgcaggcaattaaagattcgcgggtttctatcattgtcttctc-ca |
25636708 |
T |
|
| Q |
294 |
aaga-tatgccgattcaacgtggtgtttggaagagatggctactattgctgaat |
346 |
Q |
| |
|
|||| ||||| ||||| ||||||||||| || |||||| |||||| ||||| |
|
|
| T |
25636709 |
aagattatgcttcatcaacatggtgtttggatgaaatggctgctattgatgaat |
25636762 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 84 - 259
Target Start/End: Complemental strand, 25436580 - 25436405
Alignment:
| Q |
84 |
tagcatccaaagctatagatatgatgtgtttatcagtttccgtggtgctgacacccgcaacacttttgttgatcatctttatgctcatctaaaaagaaag |
183 |
Q |
| |
|
||||||| ||| | ||| ||| |||||||| |||||||| | ||| |||| |||||||| |||||||||||||||| | |||||||| ||||| |
|
|
| T |
25436580 |
tagcatcgaaaaccataaatacgatgtgttcatcagttttagaggttctgagacccgcaattcttttgttgatcatctccactctcatctagttagaaaa |
25436481 |
T |
|
| Q |
184 |
ggtatttttgccttcaaggatgatcaaaggcttgagaaaggagaatccctttcaccgcaacttctacaagcaattc |
259 |
Q |
| |
|
||||||||| ||||||||||||| | ||| | ||||||||| || ||||||| ||||||||||||||||||| |
|
|
| T |
25436480 |
ggtatttttaccttcaaggatgacaagcagctccaaaaaggagaagccatttcaccccaacttctacaagcaattc |
25436405 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 97 - 261
Target Start/End: Complemental strand, 25479049 - 25478885
Alignment:
| Q |
97 |
tatagatatgatgtgtttatcagtttccgtggtgctgacacccgcaacacttttgttgatcatctttatgctcatctaaaaagaaagggtatttttgcct |
196 |
Q |
| |
|
|||||||| || ||||||||||||||| | ||| ||||||||| || || |||| ||| ||||| ||||||||||| | ||||| |||||||| | | |
|
|
| T |
25479049 |
tatagatacgacgtgtttatcagtttcagaggtattgacacccgtaaaacctttgctgaccatctctatgctcatctcactagaaaaggtattttcacgt |
25478950 |
T |
|
| Q |
197 |
tcaaggatgatcaaaggcttgagaaaggagaatccctttcaccgcaacttctacaagcaattcaa |
261 |
Q |
| |
|
||| |||||| || ||| |||||||| |||||| |||||| ||||||| ||| ||||||||| |
|
|
| T |
25478949 |
tcatggatgaccagcagctcgagaaaggggaatccatttcactccaacttcgacaggcaattcaa |
25478885 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 98 - 346
Target Start/End: Original strand, 25442322 - 25442570
Alignment:
| Q |
98 |
atagatatgatgtgtttatcagtttccgtggtgctgacacccgcaacacttttgttgatcatctttatgctcatctaaaaagaaagggtatttttgcctt |
197 |
Q |
| |
|
||||||| |||||||| |||||||| | ||| ||||||||||||| | |||||||| ||||| || | |||||| | ||||| |||||||| | ||| |
|
|
| T |
25442322 |
atagatacgatgtgttcatcagttttagaggtcctgacacccgcaattcctttgttgaccatctctacgatcatctcactagaaaaggtattttcgtctt |
25442421 |
T |
|
| Q |
198 |
caaggatgatcaaaggcttgagaaaggagaatccctttcaccgcaacttctacaagcaattcaaagttcaagaatttctattgttgtcttctctcaaaga |
297 |
Q |
| |
|
||||||||| || |||| ||||||| |||||| |||||| |||||| | || |||||| || ||| | ||||||| |||||||||| |||||| |
|
|
| T |
25442422 |
caaggatgacaaatcgcttcagaaaggcgaatccatttcactccaacttttgcaggcaattaaagattcgcgggtttctatcattgtcttctc-caaaga |
25442520 |
T |
|
| Q |
298 |
-tatgccgattcaacgtggtgtttggaagagatggctactattgctgaat |
346 |
Q |
| |
|
||||| ||||| ||||||||||| || |||||| |||||| ||||| |
|
|
| T |
25442521 |
ttatgcttcatcaacatggtgtttggatgaaatggctgctattgatgaat |
25442570 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 71; Significance: 5e-32; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 85 - 207
Target Start/End: Complemental strand, 500444 - 500322
Alignment:
| Q |
85 |
agcatccaaagctatagatatgatgtgtttatcagtttccgtggtgctgacacccgcaacacttttgttgatcatctttatgctcatctaaaaagaaagg |
184 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| | ||| | ||||| ||||||||||||||||||||||| ||||||||||| | ||||| | |
|
|
| T |
500444 |
agcatccaaagctatagatatgatgtgtttatcagtttcagaggttccgacacacgcaacacttttgttgatcatctctatgctcatctcattagaaaag |
500345 |
T |
|
| Q |
185 |
gtatttttgccttcaaggatgat |
207 |
Q |
| |
|
||||||| |||| ||||||||| |
|
|
| T |
500344 |
gtattttcacctttaaggatgat |
500322 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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