View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6333_low_4 (Length: 381)

Name: NF6333_low_4
Description: NF6333
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6333_low_4
NF6333_low_4
[»] chr3 (46 HSPs)
chr3 (99-371)||(7324365-7324637)
chr3 (99-371)||(2476476-2476751)
chr3 (99-342)||(9561948-9562191)
chr3 (17-91)||(7325672-7325746)
chr3 (99-345)||(2491921-2492173)
chr3 (228-336)||(2631331-2631439)
chr3 (125-371)||(9565763-9566009)
chr3 (194-371)||(2635664-2635838)
chr3 (253-343)||(2659114-2659204)
chr3 (243-316)||(43991949-43992022)
chr3 (250-330)||(2644337-2644417)
chr3 (253-343)||(7334201-7334291)
chr3 (254-330)||(1891039-1891115)
chr3 (255-325)||(7442957-7443027)
chr3 (251-329)||(7942482-7942560)
chr3 (241-330)||(754584-754673)
chr3 (210-329)||(9594600-9594719)
chr3 (252-303)||(13498222-13498273)
chr3 (241-306)||(2456236-2456301)
chr3 (99-168)||(2474945-2475014)
chr3 (125-181)||(754739-754795)
chr3 (253-305)||(2442038-2442090)
chr3 (254-305)||(2696732-2696783)
chr3 (254-305)||(3754600-3754651)
chr3 (254-305)||(4142134-4142185)
chr3 (254-305)||(4157944-4157995)
chr3 (252-322)||(783782-783852)
chr3 (241-306)||(771498-771563)
chr3 (256-305)||(2459277-2459326)
chr3 (252-305)||(37753345-37753398)
chr3 (250-306)||(7430535-7430591)
chr3 (241-313)||(9608336-9608408)
chr3 (245-316)||(37757725-37757796)
chr3 (266-328)||(746360-746422)
chr3 (252-306)||(9587184-9587238)
chr3 (253-306)||(2502147-2502200)
chr3 (254-305)||(803218-803269)
chr3 (254-305)||(956381-956432)
chr3 (254-305)||(7432054-7432105)
chr3 (124-183)||(7443117-7443176)
chr3 (255-305)||(768329-768379)
chr3 (254-303)||(968671-968720)
chr3 (256-301)||(997578-997623)
chr3 (256-301)||(1013968-1014013)
chr3 (241-306)||(14888611-14888676)
chr3 (253-305)||(12133096-12133148)
[»] chr2 (9 HSPs)
chr2 (244-322)||(34560900-34560978)
chr2 (241-329)||(33038147-33038235)
chr2 (240-322)||(33026643-33026725)
chr2 (241-329)||(33020300-33020388)
chr2 (254-305)||(36577366-36577417)
chr2 (264-322)||(6538844-6538902)
chr2 (252-322)||(34570452-34570522)
chr2 (254-330)||(7160729-7160805)
chr2 (257-305)||(7168690-7168738)
[»] scaffold0044 (1 HSPs)
scaffold0044 (241-329)||(89130-89218)
[»] chr5 (10 HSPs)
chr5 (250-303)||(20292991-20293044)
chr5 (254-322)||(11081813-11081881)
chr5 (254-305)||(23766862-23766913)
chr5 (254-305)||(23816710-23816761)
chr5 (250-303)||(20301439-20301492)
chr5 (250-303)||(20305852-20305905)
chr5 (250-303)||(20310256-20310309)
chr5 (254-305)||(23769646-23769697)
chr5 (254-305)||(23819494-23819545)
chr5 (254-304)||(3181717-3181767)
[»] chr7 (4 HSPs)
chr7 (244-335)||(39298967-39299058)
chr7 (252-305)||(27755721-27755774)
chr7 (253-305)||(1078160-1078212)
chr7 (254-304)||(1421170-1421220)
[»] chr6 (4 HSPs)
chr6 (255-327)||(24417464-24417536)
chr6 (256-327)||(19119065-19119136)
chr6 (256-327)||(19126359-19126430)
chr6 (257-305)||(370785-370833)
[»] chr4 (2 HSPs)
chr4 (258-330)||(20016160-20016232)
chr4 (254-329)||(20019748-20019823)
[»] chr1 (6 HSPs)
chr1 (258-322)||(51381438-51381502)
chr1 (254-316)||(51858606-51858668)
chr1 (254-295)||(23896147-23896188)
chr1 (254-303)||(24629213-24629262)
chr1 (260-321)||(51407543-51407604)
chr1 (254-318)||(51782799-51782863)


Alignment Details
Target: chr3 (Bit Score: 241; Significance: 1e-133; HSPs: 46)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 99 - 371
Target Start/End: Complemental strand, 7324637 - 7324365
Alignment:
Q  99 attggttggcaagtgatgattcaaatattctttcgcttgatttaaagaaggagtcatatcaacatcttttactacctgattccgaaaatgacttatggat 198  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  7324637 attggttggcaagtgatgattcaaatattctttcgcttgatttaaacaaggagtcatatcaacatcttttgctacctgattccgaaaatgacttatggat 7324538  T
Q  199 cttgcaggtggtgagggattgccttggtctctttggaactgatgatatgtctttggatgtttggattatgaaggactatagaaataaagagtcttggact 298  Q
    |||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||    
T  7324537 cttgcatgtggtgagggattgccttggtctctttggaactggtgatatgtctttggatgtttggattatgaaggactacggaaataaagagtcttggact 7324438  T
Q  299 aaattgtatagtgttcctaacatgcaagatcacggtttagaagcctacgatgctttatacatttctgatgatg 371  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||    
T  7324437 aaattgtatagtgttcctaacatgcaagatcgcggtttagaagcctacgatgctttatacatttctgaggatg 7324365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 99 - 371
Target Start/End: Original strand, 2476476 - 2476751
Alignment:
Q  99 attggttggcaagtgatgattcaaatattctttcgcttgatttaaagaaggagtcatatcaacatcttttactacctgattccgaaaatgacttatggat 198  Q
    ||||||||||   |||||||||||| |||||||| ||||||||||||||||||||||||||||  ||||| |||||||||| | |   | | |  |||||    
T  2476476 attggttggcccttgatgattcaaaaattctttctcttgatttaaagaaggagtcatatcaactgcttttgctacctgattacaagtgtcattcgtggat 2476575  T
Q  199 ctt---gcaggtggtgagggattgccttggtctctttggaactgatgatatgtctttggatgtttggattatgaaggactatagaaataaagagtcttgg 295  Q
    |||   | | || |||||||||||| |  || ||| || | ||  |||||||| | |||||||||||||||||||  ||||| |||||||||||||||||    
T  2476576 cttcttggatgtagtgagggattgcttgtgtatctctgcagctagtgatatgtttatggatgtttggattatgaaacactatggaaataaagagtcttgg 2476675  T
Q  296 actaaattgtatagtgttcctaacatgcaagatcacggtttagaagcctacgatgctttatacatttctgatgatg 371  Q
    ||||||||||| | ||||||||||||||||||||  ||||||||||||||| ||||||||||||||||||| ||||    
T  2476676 actaaattgtacactgttcctaacatgcaagatcggggtttagaagcctacaatgctttatacatttctgaggatg 2476751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 99 - 342
Target Start/End: Complemental strand, 9562191 - 9561948
Alignment:
Q  99 attggttggcaagtgatgattcaaatattctttcgcttgatttaaagaaggagtcatatcaacatcttttactacctgattccgaaaatgacttatggat 198  Q
    |||||||||||||||||||||||  |||||| || |||||| || |||||||||| ||||||||  |||| ||||||||| |||| |||||||| |||||    
T  9562191 attggttggcaagtgatgattcatttattctctctcttgatgtagagaaggagtcgtatcaacaggttttgctacctgataccgagaatgacttgtggat 9562092  T
Q  199 cttgcaggtggtgagggattgccttggtctctttggaactgatgatatgtctttggatgtttggattatgaaggactatagaaataaagagtcttggact 298  Q
    ||||   ||| | ||| ||||| |  || |||| |  |||  | || ||| ||||||||||||||||||||| || ||| ||||| ||||||||||||||    
T  9562091 cttgggtgtgctaaggaattgcttgtgtatcttagctactagtaatttgtttttggatgtttggattatgaatgagtatggaaatcaagagtcttggact 9561992  T
Q  299 aaattgtatagtgttcctaacatgcaagatcacggtttagaagc 342  Q
    ||||| || |||||||||||||||||||||||||||||||||||    
T  9561991 aaattatacagtgttcctaacatgcaagatcacggtttagaagc 9561948  T

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Target: chr3; HSP #4
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 17 - 91
Target Start/End: Complemental strand, 7325746 - 7325672
Alignment:
Q  17 aaaaataagtccttattaaataacgagtcaccatataaggactctctcctgacaactaataggtctcatgcttaa 91  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7325746 aaaaataagtccttattaaataacgagtcaccatataaggactctctcctgacaactaataggtctcatgcttaa 7325672  T

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Target: chr3; HSP #5
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 99 - 345
Target Start/End: Original strand, 2491921 - 2492173
Alignment:
Q  99 attggttggcaagtgatgattcaaatattctttcgcttgatttaaagaaggagtcatatcaacatcttttactacctgattccgaaaatgac------tt 192  Q
    ||||||| ||| |||||||||||  ||||||||| ||||||||| ||||||||||||||||||| ||||| ||||||||||  || |||||       |     
T  2491921 attggttagcatgtgatgattcatgtattctttctcttgatttagagaaggagtcatatcaacaacttttcctacctgattttgagaatgagaatgattc 2492020  T
Q  193 atggatcttgcaggtggtgagggattgccttggtctctttggaactgatgatatgtctttggatgtttggattatgaaggactatagaaataaagagtct 292  Q
     | ||||||    ||| ||||||||||| |  || | |||| ||||  ||||| |  |||| ||||||||||||||||||| ||| |||||  |||||||    
T  2492021 gttgatcttaagtgtgctgagggattgcttgtgtgtttttgcaactattgataggattttgaatgtttggattatgaaggagtatggaaatcgagagtct 2492120  T
Q  293 tggactaaattgtatagtgttcctaacatgcaagatcacggtttagaagccta 345  Q
    |||||||||||||||||||||||||||||||||||||  |||||||| |||||    
T  2492121 tggactaaattgtatagtgttcctaacatgcaagatcggggtttagacgccta 2492173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 228 - 336
Target Start/End: Original strand, 2631331 - 2631439
Alignment:
Q  228 tctttggaactgatgatatgtctttggatgtttggattatgaaggactatagaaataaagagtcttggactaaattgtatagtgttcctaacatgcaaga 327  Q
    |||||| ||||  |||||||| |||| ||||||||||||||||||| ||| ||||| |||||||||||||||||||||  ||||||||| ||||||| ||    
T  2631331 tctttgcaactagtgatatgtttttgaatgtttggattatgaaggaatatggaaatcaagagtcttggactaaattgtgcagtgttcctgacatgcacga 2631430  T
Q  328 tcacggttt 336  Q
    |||||||||    
T  2631431 tcacggttt 2631439  T

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Target: chr3; HSP #7
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 125 - 371
Target Start/End: Complemental strand, 9566009 - 9565763
Alignment:
Q  125 attctttcgcttgatttaaagaaggagtcatatcaacatcttttactacctgattccgaaaatgacttatggatcttgcaggtggtgagggattgccttg 224  Q
    |||||||| |||||||||   || |||||||||||||||||||| |||||| ||||| | | ||| |  | ||| |||    ||||||||| |||| |      
T  9566009 attctttctcttgatttagtaaaagagtcatatcaacatcttttgctacctaattccaagattgattggtcgatgttgggtttggtgaggggttgcttgt 9565910  T
Q  225 gtctctttggaactgatgatatgtctttggatgtttggattatgaaggactatagaaataaagagtcttggactaaattgtatagtgttcctaacatgca 324  Q
    || |||||| || |  |||||||| | |||||||||||||||||||||| ||  || || |||||||||||||||||||||| | |||||||||||| ||    
T  9565909 gtgtctttgcaagtagtgatatgtatatggatgtttggattatgaaggagtacggagatcaagagtcttggactaaattgtacattgttcctaacataca 9565810  T
Q  325 agatcacggtttagaagcctacgatgctttatacatttctgatgatg 371  Q
    |||||| ||| |  |||||||  | |||||||| |||||||| ||||    
T  9565809 agatcagggtgtcaaagcctataaagctttatatatttctgacgatg 9565763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 194 - 371
Target Start/End: Original strand, 2635664 - 2635838
Alignment:
Q  194 tggatcttgcaggtggtgagggattgccttggtctctttggaactgatgatatgtctttggatgtttggattatgaaggactatagaaataaagagtctt 293  Q
    ||||||||| | ||| ||||| ||||| |  || |||||| ||||  |||| ||| ||||||||||||||||||| ||   ||| ||| | |||||||||    
T  2635664 tggatcttggatgtgatgaggaattgcatgtgtgtctttgcaactagtgatgtgtttttggatgtttggattatggag---tatggaagtgaagagtctt 2635760  T
Q  294 ggactaaattgtatagtgttcctaacatgcaagatcacggtttagaagcctacgatgctttatacatttctgatgatg 371  Q
    ||||||||||||| |||||||||||||||||| |||  |||||||||| |||  | |||||||| |||||||| ||||    
T  2635761 ggactaaattgtacagtgttcctaacatgcaacatcggggtttagaagtctataaagctttatatatttctgaggatg 2635838  T

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Target: chr3; HSP #9
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 253 - 343
Target Start/End: Complemental strand, 2659204 - 2659114
Alignment:
Q  253 ggatgtttggattatgaaggactatagaaataaagagtcttggactaaattgtatagtgttcctaacatgcaagatcacggtttagaagcc 343  Q
    ||||||||||||||||||||| ||| ||||| |||||||||||||||||||||| | | |||||||| |||||||||| | ||||||||||    
T  2659204 ggatgtttggattatgaaggagtatggaaatcaagagtcttggactaaattgtacactattcctaacctgcaagatcaggatttagaagcc 2659114  T

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Target: chr3; HSP #10
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 243 - 316
Target Start/End: Original strand, 43991949 - 43992022
Alignment:
Q  243 atatgtctttggatgtttggattatgaaggactatagaaataaagagtcttggactaaattgtatagtgttcct 316  Q
    |||||| |||||||||||||||||||||||| ||| |||||| |||||||||||| ||||||||||||||||||    
T  43991949 atatgtttttggatgtttggattatgaaggaatatggaaatatagagtcttggaccaaattgtatagtgttcct 43992022  T

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Target: chr3; HSP #11
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 250 - 330
Target Start/End: Complemental strand, 2644417 - 2644337
Alignment:
Q  250 tttggatgtttggattatgaaggactatagaaataaagagtcttggactaaattgtatagtgttcctaacatgcaagatca 330  Q
    |||||||||||||||||||||||| ||| ||||| |||||||||||||||||||||| | | |||||||| ||||||||||    
T  2644417 tttggatgtttggattatgaaggagtatggaaatcaagagtcttggactaaattgtacactattcctaacctgcaagatca 2644337  T

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Target: chr3; HSP #12
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 253 - 343
Target Start/End: Complemental strand, 7334291 - 7334201
Alignment:
Q  253 ggatgtttggattatgaaggactatagaaataaagagtcttggactaaattgtatagtgttcctaacatgcaagatcacggtttagaagcc 343  Q
    |||||||||||| |||||||||||  |||||||||||||||||||||||||||| | | |||||||| || ||||||  ||||||||||||    
T  7334291 ggatgtttggatcatgaaggactacggaaataaagagtcttggactaaattgtacactattcctaacctgaaagatcgtggtttagaagcc 7334201  T

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Target: chr3; HSP #13
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 254 - 330
Target Start/End: Complemental strand, 1891115 - 1891039
Alignment:
Q  254 gatgtttggattatgaaggactatagaaataaagagtcttggactaaattgtatagtgttcctaacatgcaagatca 330  Q
    ||||||||||||||||||||  || |||||||||| |||||||||||||||||||||||| || |||||| ||||||    
T  1891115 gatgtttggattatgaaggaacatggaaataaagactcttggactaaattgtatagtgtttcttacatgcgagatca 1891039  T

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Target: chr3; HSP #14
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 255 - 325
Target Start/End: Complemental strand, 7443027 - 7442957
Alignment:
Q  255 atgtttggattatgaaggactatagaaataaagagtcttggactaaattgtatagtgttcctaacatgcaa 325  Q
    |||||||||| |||||||| ||| ||||| |||||||||||||||| ||||||||||||||||| ||||||    
T  7443027 atgtttggatcatgaaggagtatggaaatcaagagtcttggactaagttgtatagtgttcctaaaatgcaa 7442957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 251 - 329
Target Start/End: Original strand, 7942482 - 7942560
Alignment:
Q  251 ttggatgtttggattatgaaggactatagaaataaagagtcttggactaaattgtatagtgttcctaacatgcaagatc 329  Q
    ||||||||||||||||||||||| ||| | |||||||||||||||| ||||||||| | ||||||| ||||| ||||||    
T  7942482 ttggatgtttggattatgaaggagtatggtaataaagagtcttggattaaattgtacaatgttccttacatggaagatc 7942560  T

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Target: chr3; HSP #16
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 241 - 330
Target Start/End: Complemental strand, 754673 - 754584
Alignment:
Q  241 tgatatgtctttggatgtttggattatgaaggactatagaaataaagagtcttggactaaattgtatagtgttcctaacatgcaagatca 330  Q
    |||||||| | |||||||||||||||||||||| ||| || || |||||||||||||||||||||| | ||||||  |||| ||||||||    
T  754673 tgatatgtttatggatgtttggattatgaaggagtatggagatcaagagtcttggactaaattgtacattgttcccgacatacaagatca 754584  T

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Target: chr3; HSP #17
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 210 - 329
Target Start/End: Complemental strand, 9594719 - 9594600
Alignment:
Q  210 tgagggattgccttggtctctttggaactgatgatatgtctttggatgtttggattatgaaggactatagaaataaagagtcttggactaaattgtatag 309  Q
    ||||||||||| |  || |||||| ||||  |||||||| |||| ||||||||||||||||  | ||  ||||| |||||||||||||||||||||        
T  9594719 tgagggattgcttgtgtgtctttgaaactagtgatatgtttttgaatgtttggattatgaataagtacggaaatgaagagtcttggactaaattgttcca 9594620  T
Q  310 tgttcctaacatgcaagatc 329  Q
    ||||||||||||||||||||    
T  9594619 tgttcctaacatgcaagatc 9594600  T

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Target: chr3; HSP #18
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 252 - 303
Target Start/End: Original strand, 13498222 - 13498273
Alignment:
Q  252 tggatgtttggattatgaaggactatagaaataaagagtcttggactaaatt 303  Q
    |||||||||||||||||||||| ||| |||||||||||||||||||||||||    
T  13498222 tggatgtttggattatgaaggaatatggaaataaagagtcttggactaaatt 13498273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 241 - 306
Target Start/End: Original strand, 2456236 - 2456301
Alignment:
Q  241 tgatatgtctttggatgtttggattatgaaggactatagaaataaagagtcttggactaaattgta 306  Q
    |||||||| || |||||||||| |||||||||| ||| |||||||||| |||||||||||||||||    
T  2456236 tgatatgttttgggatgtttgggttatgaaggaatatggaaataaagactcttggactaaattgta 2456301  T

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Target: chr3; HSP #20
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 99 - 168
Target Start/End: Original strand, 2474945 - 2475014
Alignment:
Q  99 attggttggcaagtgatgattcaaatattctttcgcttgatttaaagaaggagtcatatcaacatctttt 168  Q
    |||||||| |||||||| |||||  ||||||||| ||||||||| ||||||||||||||||||| |||||    
T  2474945 attggttgccaagtgattattcacgtattctttctcttgatttagagaaggagtcatatcaacaactttt 2475014  T

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Target: chr3; HSP #21
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 125 - 181
Target Start/End: Complemental strand, 754795 - 754739
Alignment:
Q  125 attctttcgcttgatttaaagaaggagtcatatcaacatcttttactacctgattcc 181  Q
    |||||||| ||||||||| ||||||||||||||||||||||||| |||||| |||||    
T  754795 attctttctcttgatttagagaaggagtcatatcaacatcttttgctacctaattcc 754739  T

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Target: chr3; HSP #22
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 253 - 305
Target Start/End: Original strand, 2442038 - 2442090
Alignment:
Q  253 ggatgtttggattatgaaggactatagaaataaagagtcttggactaaattgt 305  Q
    ||||||||||||||||||||| ||| |||||||||| ||||||||||||||||    
T  2442038 ggatgtttggattatgaaggagtatggaaataaagattcttggactaaattgt 2442090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 254 - 305
Target Start/End: Complemental strand, 2696783 - 2696732
Alignment:
Q  254 gatgtttggattatgaaggactatagaaataaagagtcttggactaaattgt 305  Q
    |||||||||||||||||||| ||| |||||||||||||||||| ||||||||    
T  2696783 gatgtttggattatgaaggaatatggaaataaagagtcttggattaaattgt 2696732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 254 - 305
Target Start/End: Original strand, 3754600 - 3754651
Alignment:
Q  254 gatgtttggattatgaaggactatagaaataaagagtcttggactaaattgt 305  Q
    ||||||||| |||||||||| ||| |||||||||||||||||||||||||||    
T  3754600 gatgtttgggttatgaaggaatatggaaataaagagtcttggactaaattgt 3754651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 254 - 305
Target Start/End: Complemental strand, 4142185 - 4142134
Alignment:
Q  254 gatgtttggattatgaaggactatagaaataaagagtcttggactaaattgt 305  Q
    ||||||||| |||||||||| ||| |||||||||||||||||||||||||||    
T  4142185 gatgtttggcttatgaaggaatatggaaataaagagtcttggactaaattgt 4142134  T

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Target: chr3; HSP #26
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 254 - 305
Target Start/End: Complemental strand, 4157995 - 4157944
Alignment:
Q  254 gatgtttggattatgaaggactatagaaataaagagtcttggactaaattgt 305  Q
    ||||||||| |||||||||| ||| |||||||||||||||||||||||||||    
T  4157995 gatgtttggcttatgaaggaatatggaaataaagagtcttggactaaattgt 4157944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 252 - 322
Target Start/End: Complemental strand, 783852 - 783782
Alignment:
Q  252 tggatgtttggattatgaaggactatagaaataaagagtcttggactaaattgtatagtgttcctaacatg 322  Q
    |||||||||||||||||||||| ||| |||||| | || | |||||||||||||||| ||||||| |||||    
T  783852 tggatgtttggattatgaaggaatatggaaatacaaagccatggactaaattgtatactgttccttacatg 783782  T

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Target: chr3; HSP #28
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 241 - 306
Target Start/End: Complemental strand, 771563 - 771498
Alignment:
Q  241 tgatatgtctttggatgtttggattatgaaggactatagaaataaagagtcttggactaaattgta 306  Q
    |||||||| || |||||||||| |||||||||| ||| |||||| ||| |||||||||||||||||    
T  771563 tgatatgttttgggatgtttgggttatgaaggaatatggaaatacagactcttggactaaattgta 771498  T

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Target: chr3; HSP #29
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 256 - 305
Target Start/End: Original strand, 2459277 - 2459326
Alignment:
Q  256 tgtttggattatgaaggactatagaaataaagagtcttggactaaattgt 305  Q
    |||||||||||||||||| ||| ||||||||||||||||||| |||||||    
T  2459277 tgtttggattatgaaggaatatggaaataaagagtcttggacaaaattgt 2459326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 252 - 305
Target Start/End: Complemental strand, 37753398 - 37753345
Alignment:
Q  252 tggatgtttggattatgaaggactatagaaataaagagtcttggactaaattgt 305  Q
    ||||||||||||||||| |||| ||| |||| ||||||||||||||||||||||    
T  37753398 tggatgtttggattatggaggaatatggaaagaaagagtcttggactaaattgt 37753345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 250 - 306
Target Start/End: Complemental strand, 7430591 - 7430535
Alignment:
Q  250 tttggatgtttggattatgaaggactatagaaataaagagtcttggactaaattgta 306  Q
    |||||||||||||||||||||| | ||| |||||||| |||||| ||||||||||||    
T  7430591 tttggatgtttggattatgaagaagtatggaaataaaaagtcttagactaaattgta 7430535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 241 - 313
Target Start/End: Complemental strand, 9608408 - 9608336
Alignment:
Q  241 tgatatgtctttggatgtttggattatgaaggactatagaaataaagagtcttggactaaattgtatagtgtt 313  Q
    |||||||| ||| ||||||||| |||||||||| ||| |||||| ||| |||||||||||||| || ||||||    
T  9608408 tgatatgttttttgatgtttgggttatgaaggaatatggaaatatagattcttggactaaattatacagtgtt 9608336  T

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Target: chr3; HSP #33
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 245 - 316
Target Start/End: Complemental strand, 37757796 - 37757725
Alignment:
Q  245 atgtctttggatgtttggattatgaaggactatagaaataaagagtcttggactaaattgtatagtgttcct 316  Q
    |||| ||||||| | |||||||||||||| ||| |||| |||||||||||||| || ||||| |||||||||    
T  37757796 atgtgtttggatatatggattatgaaggaatatggaaacaaagagtcttggacgaagttgtacagtgttcct 37757725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 266 - 328
Target Start/End: Complemental strand, 746422 - 746360
Alignment:
Q  266 atgaaggactatagaaataaagagtcttggactaaattgtatagtgttcctaacatgcaagat 328  Q
    |||||||| ||| ||||| |||||||||||||||||||||| | |||||||||| | ||||||    
T  746422 atgaaggagtatggaaatcaagagtcttggactaaattgtacattgttcctaacctacaagat 746360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 252 - 306
Target Start/End: Complemental strand, 9587238 - 9587184
Alignment:
Q  252 tggatgtttggattatgaaggactatagaaataaagagtcttggactaaattgta 306  Q
    |||| ||||||||||||||||| ||| ||||||||||| ||||||| ||||||||    
T  9587238 tggaggtttggattatgaaggaatatggaaataaagagccttggacaaaattgta 9587184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 253 - 306
Target Start/End: Original strand, 2502147 - 2502200
Alignment:
Q  253 ggatgtttggattatgaaggactatagaaataaagagtcttggactaaattgta 306  Q
    ||||||||||||||||||||| ||| ||||||| |||| |||||||||| ||||    
T  2502147 ggatgtttggattatgaaggagtatggaaataaggagttttggactaaactgta 2502200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 254 - 305
Target Start/End: Complemental strand, 803269 - 803218
Alignment:
Q  254 gatgtttggattatgaaggactatagaaataaagagtcttggactaaattgt 305  Q
    ||||||||| ||||||| || ||| |||||||||||||||||||||| ||||    
T  803269 gatgtttgggttatgaaagaatatggaaataaagagtcttggactaagttgt 803218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 254 - 305
Target Start/End: Original strand, 956381 - 956432
Alignment:
Q  254 gatgtttggattatgaaggactatagaaataaagagtcttggactaaattgt 305  Q
    |||||||||||||||||||| ||| |||| ||||||||||||  ||||||||    
T  956381 gatgtttggattatgaaggaatatggaaaaaaagagtcttggcataaattgt 956432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 254 - 305
Target Start/End: Complemental strand, 7432105 - 7432054
Alignment:
Q  254 gatgtttggattatgaaggactatagaaataaagagtcttggactaaattgt 305  Q
    |||||||||| ||||||||| ||| |||||||||| || |||||||||||||    
T  7432105 gatgtttggagtatgaaggaatatggaaataaagaatcgtggactaaattgt 7432054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 124 - 183
Target Start/End: Complemental strand, 7443176 - 7443117
Alignment:
Q  124 tattctttcgcttgatttaaagaaggagtcatatcaacatcttttactacctgattccga 183  Q
    ||||||||| ||||||||| | |||||||| |||||| | ||||| ||||||||||||||    
T  7443176 tattctttctcttgatttagaaaaggagtcgtatcaaaaacttttcctacctgattccga 7443117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 255 - 305
Target Start/End: Complemental strand, 768379 - 768329
Alignment:
Q  255 atgtttggattatgaaggactatagaaataaagagtcttggactaaattgt 305  Q
    |||||||||||||||| || ||  ||||| |||||||||||||||||||||    
T  768379 atgtttggattatgaatgagtacggaaatgaagagtcttggactaaattgt 768329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #42
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 254 - 303
Target Start/End: Original strand, 968671 - 968720
Alignment:
Q  254 gatgtttggattatgaaggactatagaaataaagagtcttggactaaatt 303  Q
    ||||||||| ||||||||||  || ||||||||||||| |||||||||||    
T  968671 gatgtttgggttatgaaggaacatggaaataaagagtcatggactaaatt 968720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #43
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 256 - 301
Target Start/End: Original strand, 997578 - 997623
Alignment:
Q  256 tgtttggattatgaaggactatagaaataaagagtcttggactaaa 301  Q
    ||||||| | |||||||| ||| |||||||||||||||||||||||    
T  997578 tgtttgggtaatgaaggaatatggaaataaagagtcttggactaaa 997623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #44
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 256 - 301
Target Start/End: Original strand, 1013968 - 1014013
Alignment:
Q  256 tgtttggattatgaaggactatagaaataaagagtcttggactaaa 301  Q
    ||||||| | |||||||| ||| |||||||||||||||||||||||    
T  1013968 tgtttgggtaatgaaggaatatggaaataaagagtcttggactaaa 1014013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #45
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 241 - 306
Target Start/End: Complemental strand, 14888676 - 14888611
Alignment:
Q  241 tgatatgtctttggatgtttggattatgaaggactatagaaataaagagtcttggactaaattgta 306  Q
    |||||||| | |||| |||||||||||||| || |||  |||||||||| ||| ||||||||||||    
T  14888676 tgatatgtttgtggaggtttggattatgaatgaatatgaaaataaagagccttagactaaattgta 14888611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #46
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 253 - 305
Target Start/End: Original strand, 12133096 - 12133148
Alignment:
Q  253 ggatgtttggattatgaaggactatagaaataaagagtcttggactaaattgt 305  Q
    |||||||||| |||||| ||| ||| |||||| |||||| |||||||||||||    
T  12133096 ggatgtttgggttatgagggagtatggaaatagagagtcgtggactaaattgt 12133148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 47; Significance: 1e-17; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 244 - 322
Target Start/End: Complemental strand, 34560978 - 34560900
Alignment:
Q  244 tatgtctttggatgtttggattatgaaggactatagaaataaagagtcttggactaaattgtatagtgttcctaacatg 322  Q
    ||||||| |||||||||  |||||||| || ||| |||||||| | |||||||||||||||||||||||||||||||||    
T  34560978 tatgtctatggatgtttcaattatgaaagaatatggaaataaaaaatcttggactaaattgtatagtgttcctaacatg 34560900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 241 - 329
Target Start/End: Original strand, 33038147 - 33038235
Alignment:
Q  241 tgatatgtctttggatgtttggattatgaaggactatagaaataaagagtcttggactaaattgtatagtgttcctaacatgcaagatc 329  Q
    |||||||| ||| |||||||||||||||||||| ||| |||| ||| |||||||||||| ||||||  |||||||| ||||| ||||||    
T  33038147 tgatatgttttttgatgtttggattatgaaggaatatggaaacaaaaagtcttggactagattgtaccgtgttccttacatggaagatc 33038235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 240 - 322
Target Start/End: Original strand, 33026643 - 33026725
Alignment:
Q  240 atgatatgtctttggatgtttggattatgaaggactatagaaataaagagtcttggactaaattgtatagtgttcctaacatg 322  Q
    ||||||||| ||||||||||||| |||||||| | ||| |||||||| |||||||||||| ||||||  |||||||| |||||    
T  33026643 atgatatgtttttggatgtttgggttatgaagcaatatggaaataaaaagtcttggactagattgtaccgtgttcctcacatg 33026725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 241 - 329
Target Start/End: Original strand, 33020300 - 33020388
Alignment:
Q  241 tgatatgtctttggatgtttggattatgaaggactatagaaataaagagtcttggactaaattgtatagtgttcctaacatgcaagatc 329  Q
    |||||||| |||  |||| |||||||||||||| ||| |||||||| |||||||||||| ||||||  |||||||| ||||| ||||||    
T  33020300 tgatatgttttttaatgtgtggattatgaaggaatatggaaataaaaagtcttggactagattgtaccgtgttccttacatggaagatc 33020388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 254 - 305
Target Start/End: Original strand, 36577366 - 36577417
Alignment:
Q  254 gatgtttggattatgaaggactatagaaataaagagtcttggactaaattgt 305  Q
    |||||||||||||||||||| ||| |||||||||||||||||| ||||||||    
T  36577366 gatgtttggattatgaaggaatatggaaataaagagtcttggattaaattgt 36577417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 264 - 322
Target Start/End: Original strand, 6538844 - 6538902
Alignment:
Q  264 ttatgaaggactatagaaataaagagtcttggactaaattgtatagtgttcctaacatg 322  Q
    |||||||||| ||| |||||||||| ||||||||||||||||  |||||| ||||||||    
T  6538844 ttatgaaggagtatggaaataaagattcttggactaaattgttcagtgtttctaacatg 6538902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 252 - 322
Target Start/End: Complemental strand, 34570522 - 34570452
Alignment:
Q  252 tggatgtttggattatgaaggactatagaaataaagagtcttggactaaattgtatagtgttcctaacatg 322  Q
    ||||||||||| ||||| |||| ||| |||||||| ||| ||  |||||||||||||||||| ||||||||    
T  34570522 tggatgtttgggttatggaggaatatggaaataaaaagtattcaactaaattgtatagtgtttctaacatg 34570452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 254 - 330
Target Start/End: Complemental strand, 7160805 - 7160729
Alignment:
Q  254 gatgtttggattatgaaggactatagaaataaagagtcttggactaaattgtatagtgttcctaacatgcaagatca 330  Q
    ||||||||| |||||||||| ||| ||||||| || ||||||||||||||||   || ||||| ||||| |||||||    
T  7160805 gatgtttggcttatgaaggagtatggaaataatgattcttggactaaattgttccgtcttcctcacatgaaagatca 7160729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 257 - 305
Target Start/End: Complemental strand, 7168738 - 7168690
Alignment:
Q  257 gtttggattatgaaggactatagaaataaagagtcttggactaaattgt 305  Q
    |||||| |||||||||| ||| ||||||| || ||||||||||||||||    
T  7168738 gtttggcttatgaaggaatatggaaataacgattcttggactaaattgt 7168690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0044 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 241 - 329
Target Start/End: Original strand, 89130 - 89218
Alignment:
Q  241 tgatatgtctttggatgtttggattatgaaggactatagaaataaagagtcttggactaaattgtatagtgttcctaacatgcaagatc 329  Q
    |||||| | ||| ||| ||||| |||||||||| ||| |||||||||||||||||||||||||||| | ||||||| ||||| ||||||    
T  89130 tgatatattttttgatatttgggttatgaaggaatatggaaataaagagtcttggactaaattgtacaatgttccttacatggaagatc 89218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 250 - 303
Target Start/End: Original strand, 20292991 - 20293044
Alignment:
Q  250 tttggatgtttggattatgaaggactatagaaataaagagtcttggactaaatt 303  Q
    |||||||||||||||||||||||| ||| ||| |||||||||||||||||||||    
T  20292991 tttggatgtttggattatgaaggaatatggaattaaagagtcttggactaaatt 20293044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 254 - 322
Target Start/End: Original strand, 11081813 - 11081881
Alignment:
Q  254 gatgtttggattatgaaggactatagaaataaagagtcttggactaaattgtatagtgttcctaacatg 322  Q
    ||||||||| |||||||||| ||| ||||||||||||||||||||||||||| || | ||||| |||||    
T  11081813 gatgtttgggttatgaaggagtatggaaataaagagtcttggactaaattgtttactattccttacatg 11081881  T

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Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 254 - 305
Target Start/End: Complemental strand, 23766913 - 23766862
Alignment:
Q  254 gatgtttggattatgaaggactatagaaataaagagtcttggactaaattgt 305  Q
    ||||||||||||||||| || ||| |||||||||||||||||||||||||||    
T  23766913 gatgtttggattatgaaagaatatggaaataaagagtcttggactaaattgt 23766862  T

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Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 254 - 305
Target Start/End: Complemental strand, 23816761 - 23816710
Alignment:
Q  254 gatgtttggattatgaaggactatagaaataaagagtcttggactaaattgt 305  Q
    ||||||||||||||||| || ||| |||||||||||||||||||||||||||    
T  23816761 gatgtttggattatgaaagaatatggaaataaagagtcttggactaaattgt 23816710  T

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Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 250 - 303
Target Start/End: Original strand, 20301439 - 20301492
Alignment:
Q  250 tttggatgtttggattatgaaggactatagaaataaagagtcttggactaaatt 303  Q
    |||||||||||||||||||||||| |||  || |||||||||||||||||||||    
T  20301439 tttggatgtttggattatgaaggaatatgcaattaaagagtcttggactaaatt 20301492  T

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Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 250 - 303
Target Start/End: Original strand, 20305852 - 20305905
Alignment:
Q  250 tttggatgtttggattatgaaggactatagaaataaagagtcttggactaaatt 303  Q
    ||||||||| |||||||||||||| ||| ||| |||||||||||||||||||||    
T  20305852 tttggatgtctggattatgaaggaatatggaattaaagagtcttggactaaatt 20305905  T

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Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 250 - 303
Target Start/End: Original strand, 20310256 - 20310309
Alignment:
Q  250 tttggatgtttggattatgaaggactatagaaataaagagtcttggactaaatt 303  Q
    ||||||||| |||||||||||||| ||| ||| |||||||||||||||||||||    
T  20310256 tttggatgtctggattatgaaggaatatggaattaaagagtcttggactaaatt 20310309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 254 - 305
Target Start/End: Complemental strand, 23769697 - 23769646
Alignment:
Q  254 gatgtttggattatgaaggactatagaaataaagagtcttggactaaattgt 305  Q
    |||||||||||||||||||| ||| | ||||||| |||||||||||||||||    
T  23769697 gatgtttggattatgaaggaatatgggaataaagcgtcttggactaaattgt 23769646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 254 - 305
Target Start/End: Complemental strand, 23819545 - 23819494
Alignment:
Q  254 gatgtttggattatgaaggactatagaaataaagagtcttggactaaattgt 305  Q
    |||||||||||||||||||| ||| | ||||||| |||||||||||||||||    
T  23819545 gatgtttggattatgaaggaatatgggaataaagcgtcttggactaaattgt 23819494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 254 - 304
Target Start/End: Original strand, 3181717 - 3181767
Alignment:
Q  254 gatgtttggattatgaaggactatagaaataaagagtcttggactaaattg 304  Q
    ||||||||| |||||||||| ||| ||||| |||||||||||| |||||||    
T  3181717 gatgtttggcttatgaaggaatatggaaatgaagagtcttggattaaattg 3181767  T

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Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 244 - 335
Target Start/End: Original strand, 39298967 - 39299058
Alignment:
Q  244 tatgtctttggatgtttggattatgaaggactatagaaataaagagtcttggactaaattgtatagtgttcctaacatgcaagatcacggtt 335  Q
    ||||| ||| ||||||||| || ||||||| | | ||||||||||||| ||||||||||| || ||||||||| ||||| ||||||| ||||    
T  39298967 tatgttttttgatgtttgggttttgaaggaatgtggaaataaagagtcctggactaaattttacagtgttccttacatggaagatcagggtt 39299058  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 252 - 305
Target Start/End: Original strand, 27755721 - 27755774
Alignment:
Q  252 tggatgtttggattatgaaggactatagaaataaagagtcttggactaaattgt 305  Q
    ||||| || ||||||||||||| ||||||||||||||||| | |||||||||||    
T  27755721 tggattttaggattatgaaggaatatagaaataaagagtcatagactaaattgt 27755774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 253 - 305
Target Start/End: Complemental strand, 1078212 - 1078160
Alignment:
Q  253 ggatgtttggattatgaaggactatagaaataaagagtcttggactaaattgt 305  Q
    |||||||||| |||||||||| ||| |||||| |||||| |||||||||||||    
T  1078212 ggatgtttgggttatgaaggagtatggaaatagagagtcgtggactaaattgt 1078160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 254 - 304
Target Start/End: Complemental strand, 1421220 - 1421170
Alignment:
Q  254 gatgtttggattatgaaggactatagaaataaagagtcttggactaaattg 304  Q
    ||||||||| |||||||||| ||  |||||||||||||||||| |||||||    
T  1421220 gatgtttggcttatgaaggaatacggaaataaagagtcttggattaaattg 1421170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.000000000009; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 255 - 327
Target Start/End: Complemental strand, 24417536 - 24417464
Alignment:
Q  255 atgtttggattatgaaggactatagaaataaagagtcttggactaaattgtatagtgttcctaacatgcaaga 327  Q
    |||||||||||||||| || ||| |||||||||| ||||||||||||||||| ||| |||   ||||||||||    
T  24417536 atgtttggattatgaaagaatatggaaataaagaatcttggactaaattgtacagtattctacacatgcaaga 24417464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 256 - 327
Target Start/End: Original strand, 19119065 - 19119136
Alignment:
Q  256 tgtttggattatgaaggactatagaaataaagagtcttggactaaattgtatagtgttcctaacatgcaaga 327  Q
    ||||||| | |||||||| ||| ||||| ||||||||||||||||||||| |  ||||||| ||||| ||||    
T  19119065 tgtttggttgatgaaggaatatggaaatgaagagtcttggactaaattgtttcatgttccttacatggaaga 19119136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 256 - 327
Target Start/End: Original strand, 19126359 - 19126430
Alignment:
Q  256 tgtttggattatgaaggactatagaaataaagagtcttggactaaattgtatagtgttcctaacatgcaaga 327  Q
    ||||||| | |||||||| ||| ||||| ||||||||||||||||||||| |  ||||||| ||||| ||||    
T  19126359 tgtttggttgatgaaggaatatggaaatgaagagtcttggactaaattgtttcatgttccttacatggaaga 19126430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 257 - 305
Target Start/End: Complemental strand, 370833 - 370785
Alignment:
Q  257 gtttggattatgaaggactatagaaataaagagtcttggactaaattgt 305  Q
    |||||| |||||||| | ||| |||||||||| ||||||||||||||||    
T  370833 gtttgggttatgaagaattatggaaataaagattcttggactaaattgt 370785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 258 - 330
Target Start/End: Complemental strand, 20016232 - 20016160
Alignment:
Q  258 tttggattatgaaggactatagaaataaagagtcttggactaaattgtatagtgttcctaacatgcaagatca 330  Q
    ||||||| |||||||| ||| ||| | |||||||||||||||||||||  | | || ||||||||||||||||    
T  20016232 tttggatcatgaaggaatatggaattcaagagtcttggactaaattgttcactctttctaacatgcaagatca 20016160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 254 - 329
Target Start/End: Complemental strand, 20019823 - 20019748
Alignment:
Q  254 gatgtttggattatgaaggactatagaaataaagagtcttggactaaattgtatagtgttcctaacatgcaagatc 329  Q
    ||||||||| | |||||||| ||| ||| | |||||||||||||||||||||  | | || |||||||||||||||    
T  20019823 gatgtttgggtcatgaaggaatatggaattcaagagtcttggactaaattgttcactctttctaacatgcaagatc 20019748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 258 - 322
Target Start/End: Complemental strand, 51381502 - 51381438
Alignment:
Q  258 tttggattatgaaggactatagaaataaagagtcttggactaaattgtatagtgttcctaacatg 322  Q
    ||||||||||||| || ||| ||||| |||||||||||||||||||||  ||| ||||| |||||    
T  51381502 tttggattatgaaagaatatggaaatgaagagtcttggactaaattgttcagtattccttacatg 51381438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 254 - 316
Target Start/End: Original strand, 51858606 - 51858668
Alignment:
Q  254 gatgtttggattatgaaggactatagaaataaagagtcttggactaaattgtatagtgttcct 316  Q
    ||||||||||| |||||||| ||| |||||  ||| ||||||||||||||||  |||||||||    
T  51858606 gatgtttggatcatgaaggaatatggaaatgtagaatcttggactaaattgttaagtgttcct 51858668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 254 - 295
Target Start/End: Complemental strand, 23896188 - 23896147
Alignment:
Q  254 gatgtttggattatgaaggactatagaaataaagagtcttgg 295  Q
    ||||||||| |||||||||| ||| |||||||||||||||||    
T  23896188 gatgtttggcttatgaaggaatatggaaataaagagtcttgg 23896147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 254 - 303
Target Start/End: Complemental strand, 24629262 - 24629213
Alignment:
Q  254 gatgtttggattatgaaggactatagaaataaagagtcttggactaaatt 303  Q
    ||||||||| |||||||||| ||  |||||||||||||||||| ||||||    
T  24629262 gatgtttggcttatgaaggaatacggaaataaagagtcttggattaaatt 24629213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 260 - 321
Target Start/End: Complemental strand, 51407604 - 51407543
Alignment:
Q  260 tggattatgaaggactatagaaataaagagtcttggactaaattgtatagtgttcctaacat 321  Q
    |||||||||||||| ||| | ||| || ||||||||||||||||||  ||||||||| ||||    
T  51407604 tggattatgaaggaatatgggaatgaacagtcttggactaaattgttaagtgttcctcacat 51407543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 254 - 318
Target Start/End: Original strand, 51782799 - 51782863
Alignment:
Q  254 gatgtttggattatgaaggactatagaaataaagagtcttggactaaattgtatagtgttcctaa 318  Q
    |||||||||||||||||||| ||| ||||| || | ||||||| |||||| |  |||||||||||    
T  51782799 gatgtttggattatgaaggaatatggaaatgaacaatcttggaataaattattaagtgttcctaa 51782863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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