View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6333_low_5 (Length: 364)
Name: NF6333_low_5
Description: NF6333
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6333_low_5 |
 | |
|
| [»] chr3 (1 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 332; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 1 - 364
Target Start/End: Complemental strand, 31473894 - 31473531
Alignment:
| Q |
1 |
ccgaaaaatcatcaccacgcaattccttaccatcattacaactaccctcaatcaccaccgacatctccgcagcagcacctcctctttgcgcggcatacaa |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
31473894 |
ccgaaaaatcatcaccacgcaattccttaccatcattacaactaccctcaatcaccaacgacatctccgcagcagcacctcctctttgcgcggcatacga |
31473795 |
T |
|
| Q |
101 |
ttactatctccgactcccagagctctcgaagctctgggagtcacgagaattccccaactggagcaacgaaccaatcctaaaaccagctttacaagcacta |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
31473794 |
ctactatctccgactcccagagctctcgaagctctgggagtcacgagaattccccaattggagcaacgaatcaatcctaaaaccagctttacaagcacta |
31473695 |
T |
|
| Q |
201 |
gaaatcactttccgtttcatctctacagttctctccgaccccagaccctactcgaacagtagggaatggagccggagactcgaatccctcgctacatggc |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31473694 |
gaaatcactttccgtttcatctctacagttctctccgaccctagaccctacacgaacagtagggaatggagccggagactcgaatccctcgctacatggc |
31473595 |
T |
|
| Q |
301 |
agattgagataatcgccatgctatgcgaggatgaagaaaataaccccgagacacgtggtacagc |
364 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
31473594 |
agattgagataatcgccatgctatgcgaagatgaagaaaataaccccgagacacgtggtacagc |
31473531 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University