View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6333_low_7 (Length: 256)

Name: NF6333_low_7
Description: NF6333
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6333_low_7
NF6333_low_7
[»] chr2 (5 HSPs)
chr2 (16-249)||(29894321-29894554)
chr2 (16-249)||(24543091-24543324)
chr2 (16-249)||(36364918-36365151)
chr2 (95-249)||(40287017-40287171)
chr2 (118-193)||(12555415-12555490)
[»] chr1 (16 HSPs)
chr1 (16-249)||(11351597-11351830)
chr1 (19-249)||(6784159-6784389)
chr1 (34-249)||(21515101-21515314)
chr1 (16-207)||(20639468-20639659)
chr1 (16-249)||(32988886-32989121)
chr1 (147-242)||(2536489-2536584)
chr1 (116-249)||(44839857-44839990)
chr1 (92-220)||(51080701-51080829)
chr1 (183-249)||(52823473-52823539)
chr1 (147-227)||(39648379-39648459)
chr1 (151-215)||(5811388-5811452)
chr1 (147-205)||(2114365-2114423)
chr1 (147-205)||(3601265-3601323)
chr1 (149-206)||(26418788-26418845)
chr1 (149-206)||(32108435-32108492)
chr1 (147-205)||(17321884-17321942)
[»] chr3 (15 HSPs)
chr3 (16-249)||(51976638-51976871)
chr3 (16-249)||(36684783-36685016)
chr3 (20-249)||(8705594-8705823)
chr3 (20-249)||(9057481-9057710)
chr3 (28-249)||(45736356-45736577)
chr3 (16-246)||(4978417-4978648)
chr3 (67-211)||(49758956-49759100)
chr3 (20-176)||(26390800-26390956)
chr3 (95-219)||(38998864-38998988)
chr3 (152-249)||(47165345-47165442)
chr3 (95-249)||(37796562-37796716)
chr3 (149-206)||(32073607-32073664)
chr3 (182-249)||(26390564-26390631)
chr3 (138-194)||(20916409-20916465)
chr3 (138-194)||(20925371-20925427)
[»] chr8 (5 HSPs)
chr8 (16-249)||(18481111-18481344)
chr8 (116-249)||(26440784-26440917)
chr8 (18-219)||(32536156-32536357)
chr8 (147-249)||(7251115-7251217)
chr8 (149-218)||(11911395-11911464)
[»] chr4 (10 HSPs)
chr4 (16-249)||(43989258-43989490)
chr4 (68-249)||(19315890-19316071)
chr4 (153-249)||(43813171-43813267)
chr4 (147-244)||(1394134-1394232)
chr4 (147-189)||(17283581-17283623)
chr4 (149-206)||(13200849-13200906)
chr4 (149-206)||(47783000-47783057)
chr4 (147-191)||(9633067-9633111)
chr4 (147-205)||(35096917-35096975)
chr4 (147-195)||(1479285-1479333)
[»] chr6 (5 HSPs)
chr6 (16-249)||(942571-942804)
chr6 (147-249)||(4513081-4513183)
chr6 (149-220)||(19047098-19047169)
chr6 (149-247)||(13757503-13757601)
chr6 (149-206)||(15950809-15950866)
[»] chr5 (11 HSPs)
chr5 (53-249)||(41197356-41197552)
chr5 (27-249)||(36779403-36779622)
chr5 (119-249)||(30376427-30376557)
chr5 (92-248)||(34905529-34905685)
chr5 (197-249)||(12378608-12378660)
chr5 (103-219)||(14856952-14857068)
chr5 (147-249)||(12714847-12714949)
chr5 (147-249)||(12776078-12776180)
chr5 (147-240)||(29985437-29985530)
chr5 (188-249)||(39714874-39714935)
chr5 (147-195)||(34530-34578)
[»] chr7 (11 HSPs)
chr7 (16-249)||(23820401-23820634)
chr7 (20-249)||(24808771-24808980)
chr7 (116-249)||(21118373-21118505)
chr7 (147-251)||(40901803-40901907)
chr7 (149-205)||(10325110-10325166)
chr7 (147-195)||(12980739-12980787)
chr7 (146-205)||(20492488-20492547)
chr7 (149-206)||(29526837-29526894)
chr7 (149-203)||(8321192-8321246)
chr7 (149-206)||(21588151-21588208)
chr7 (121-201)||(42029863-42029943)
[»] scaffold0041 (1 HSPs)
scaffold0041 (147-251)||(48111-48215)


Alignment Details
Target: chr2 (Bit Score: 210; Significance: 1e-115; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 16 - 249
Target Start/End: Complemental strand, 29894554 - 29894321
Alignment:
Q  16 tcattatgacaatgttgattttgttttggattgcaagtctgttgttgaacattttaattcaaacctaggtgatagcagtgaactaggttgtattattcag 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  29894554 tcattatgacaatgttgattttgttttggattgcaagtctgttgttgaacattttaattcaaacctaggtgatagcagtgaactagattgtattattcag 29894455  T
Q  116 gcttgtagacagttgttcgattgtagtttctagaactctcatgtcgagttcaataggaggcaaaccaatggggtcgctcatgaattagctagggtagccc 215  Q
    ||||||||||||||||||||||||| |||  |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  29894454 gcttgtagacagttgttcgattgtaattttcagaactctcatgtcgagttcaataggaggcaagccaatggggtcgctcatgaattagctagggtagccc 29894355  T
Q  216 catctcatgctaactcccacgtttatgatgatgt 249  Q
    |||||||||||| |||||||||||||||||||||    
T  29894354 catctcatgctagctcccacgtttatgatgatgt 29894321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 16 - 249
Target Start/End: Original strand, 24543091 - 24543324
Alignment:
Q  16 tcattatgacaatgttgattttgttttggattgcaagtctgttgttgaacattttaattcaaacctaggtgatagcagtgaactaggttgtattattcag 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24543091 tcattatgacaatgttgattttgttttggattgcaagtctgttgttgaacattttaattcaaacctaggtgatagcagtgaactaggttgtattattcag 24543190  T
Q  116 gcttgtagacagttgttcgattgtagtttctagaactctcatgtcgagttcaataggaggcaaaccaatggggtcgctcatgaattagctagggtagccc 215  Q
    ||||||||| ||||||||||||||| |||  ||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||    
T  24543191 gcttgtagatagttgttcgattgtaattttcagaactctcatgtcgagttcaataggatgcaagccaatggggtcgctcatgaattagctagggtagccc 24543290  T
Q  216 catctcatgctaactcccacgtttatgatgatgt 249  Q
    |||||||||||| |||||||||||||||||||||    
T  24543291 catctcatgctagctcccacgtttatgatgatgt 24543324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 16 - 249
Target Start/End: Original strand, 36364918 - 36365151
Alignment:
Q  16 tcattatgacaatgttgattttgttttggattgcaagtctgttgttgaacattttaattcaaacctaggtgatagcagtgaactaggttgtattattcag 115  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||     
T  36364918 tcattatgacaatgttgattttgttttggattccaagtctgttgttgaacgttttaattcaaacctaggtgatagcagtgaactaggttgtattattcat 36365017  T
Q  116 gcttgtagacagttgttcgattgtagtttctagaactctcatgtcgagttcaataggaggcaaaccaatggggtcgctcatgaattagctagggtagccc 215  Q
     ||||||| |||||||||||||||  |||  ||||||| |||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||    
T  36365018 acttgtaggcagttgttcgattgtcattttcagaactcccatgtcgagttcaataggaggcaagccaatgaggtcgctcatgaattagctagggtagccc 36365117  T
Q  216 catctcatgctaactcccacgtttatgatgatgt 249  Q
    |||||||||||| |||||||||||||| ||||||    
T  36365118 catctcatgctagctcccacgtttatggtgatgt 36365151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 95 - 249
Target Start/End: Complemental strand, 40287171 - 40287017
Alignment:
Q  95 gaactaggttgtattattcaggcttgtagacagttgttcgattgtagtttctagaactctcatgtcgagttcaataggaggcaaaccaatggggtcgctc 194  Q
    ||||| ||||||||||||   || ||||||||||||||  |   ||||||  | |||||||||||| |||| |||| ||||||| | ||||||||| |||    
T  40287171 gaacttggttgtattattactgcatgtagacagttgtttcaggatagttttcaaaactctcatgtcaagtttaatatgaggcaagctaatggggtcactc 40287072  T
Q  195 atgaattagctagggtagccccatctcatgctaactcccacgtttatgatgatgt 249  Q
    |||||||||| ||||||||||||||| || ||| | ||  | |||||||||||||    
T  40287071 atgaattagcgagggtagccccatctgatcctagccccaccatttatgatgatgt 40287017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 118 - 193
Target Start/End: Complemental strand, 12555490 - 12555415
Alignment:
Q  118 ttgtagacagttgttcgattgtagtttctagaactctcatgtcgagttcaataggaggcaaaccaatggggtcgct 193  Q
    |||||||||||||||  ||   |||||  |||||||||||||| |||||||||||||||||   ||||||||||||    
T  12555490 ttgtagacagttgttacataacagttttcagaactctcatgtcaagttcaataggaggcaagttaatggggtcgct 12555415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 210; Significance: 1e-115; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 16 - 249
Target Start/End: Complemental strand, 11351830 - 11351597
Alignment:
Q  16 tcattatgacaatgttgattttgttttggattgcaagtctgttgttgaacattttaattcaaacctaggtgatagcagtgaactaggttgtattattcag 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11351830 tcattatgacaatgttgattttgttttggattgcaagtctgttgttgaacattttaattcaaacctaggtgatagcagtgaactaggttgtattattcag 11351731  T
Q  116 gcttgtagacagttgttcgattgtagtttctagaactctcatgtcgagttcaataggaggcaaaccaatggggtcgctcatgaattagctagggtagccc 215  Q
    ||||||||||||||||||||||||| |||  |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  11351730 gcttgtagacagttgttcgattgtaattttcagaactctcatgtcgagttcaataggaggcaagccaatggggtcgctcatgaattagctagggtagccc 11351631  T
Q  216 catctcatgctaactcccacgtttatgatgatgt 249  Q
    |||||||||||| || ||||||||||||||||||    
T  11351630 catctcatgctagcttccacgtttatgatgatgt 11351597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 19 - 249
Target Start/End: Original strand, 6784159 - 6784389
Alignment:
Q  19 ttatgacaatgttgattttgttttggattgcaagtctgttgttgaacattttaattcaaacctaggtgatagcagtgaactaggttgtattattcaggct 118  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  6784159 ttatgacaatgttgattttgttttggattgcaagtctcttgttgaacgttttaatttaaacctaggtgatagcagtgaactaggttgtattattcaggct 6784258  T
Q  119 tgtagacagttgttcgattgtagtttctagaactctcatgtcgagttcaataggaggcaaaccaatggggtcgctcatgaattagctagggtagccccat 218  Q
    |||||||||||||||||||||  |||  |||||||||||||||||||||||||||||||| |||||||||||||| |||||||| |||||||||| ||||    
T  6784259 tgtagacagttgttcgattgttattttcagaactctcatgtcgagttcaataggaggcaagccaatggggtcgcttatgaattaactagggtagctccat 6784358  T
Q  219 ctcatgctaactcccacgtttatgatgatgt 249  Q
    ||||| ||| || ||||||||||||| ||||    
T  6784359 ctcatactagcttccacgtttatgataatgt 6784389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 34 - 249
Target Start/End: Original strand, 21515101 - 21515314
Alignment:
Q  34 ttttgttttggattgcaagtctgttgttgaacattttaattcaaacctaggtgatagcagtgaactaggttgtattattcaggcttgtagacagttgttc 133  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||| |||||| |||||||||    
T  21515101 ttttgttttggattgcaagtctgttgttgaacgttttaattcaaacctaggtgatagcagtgaactaggttgtatttttcaggtttgtaggcagttgttc 21515200  T
Q  134 gattgtagtttctagaactctcatgtcgagttcaataggaggcaaaccaatggggtcgctcatgaattagctagggtagccccatctcatgctaactccc 233  Q
    || |||| |||  |||||||  ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  21515201 gaatgtaattttcagaactc--atgtcgagttcaataggaggcaagccaatggggtcgctcatgaattagctagggtagccccatctcatgctagctccc 21515298  T
Q  234 acgtttatgatgatgt 249  Q
    ||||||||||||||||    
T  21515299 acgtttatgatgatgt 21515314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 16 - 207
Target Start/End: Original strand, 20639468 - 20639659
Alignment:
Q  16 tcattatgacaatgttgattttgttttggattgcaagtctgttgttgaacattttaattcaaacctaggtgatagcagtgaactaggttgtattattcag 115  Q
    |||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  20639468 tcattatgacaatgttgattttgttttggattccaagtttgttgttgaacattttaattcaaacctaggtgatagtagtgaactaggttgtattattcag 20639567  T
Q  116 gcttgtagacagttgttcgattgtagtttctagaactctcatgtcgagttcaataggaggcaaaccaatggggtcgctcatgaattagctag 207  Q
    |||||||| |||||||||||||||| |||  ||||||||||||| |||||||||||||||||| |||||| |||| ||||||||||||||||    
T  20639568 gcttgtaggcagttgttcgattgtaattttcagaactctcatgttgagttcaataggaggcaagccaatgaggtcactcatgaattagctag 20639659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 16 - 249
Target Start/End: Complemental strand, 32989121 - 32988886
Alignment:
Q  16 tcattatgacaatgttgattttgttttggattgcaagtctgttgttgaacattttaattcaaacctaggtgatagcagtgaactaggttgtattattcag 115  Q
    |||||||||| |||| |||||||||| ||||| ||||| ||||||||||| |||||||| |||| || ||||||||||||||||||||||||||||||||    
T  32989121 tcattatgacgatgtggattttgtttcggattccaagtatgttgttgaacgttttaatttaaacttacgtgatagcagtgaactaggttgtattattcag 32989022  T
Q  116 gcttgtagacagttgttcgattgtagtttctagaactctcatgtcgagt----tcaataggaggcaaaccaatggggtcgctcatgaattagctagggta 211  Q
     ||||||| ||||||||||||||||  ||  ||||||||||||||||||    |  ||||||||||| |||||    ||||||||||||||| |||||||    
T  32989021 acttgtaggcagttgttcgattgtaactttcagaactctcatgtcgagttatatatataggaggcaagccaat--tttcgctcatgaattagttagggta 32988924  T
Q  212 gccccatctcatgctaactcccacgtttatgatgatgt 249  Q
    |||||||||||||||| || || |||||||||||||||    
T  32988923 gccccatctcatgctagcttccgcgtttatgatgatgt 32988886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 147 - 242
Target Start/End: Complemental strand, 2536584 - 2536489
Alignment:
Q  147 agaactctcatgtcgagttcaataggaggcaaaccaatggggtcgctcatgaattagctagggtagccccatctcatgctaactcccacgtttatg 242  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||| |||||| |||||||    
T  2536584 agaactctcatgtcgagttcaataggaggcaagccaatggggtcgctcatgaattagttagggtagccccatctcatgctagctcccatgtttatg 2536489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 116 - 249
Target Start/End: Complemental strand, 44839990 - 44839857
Alignment:
Q  116 gcttgtagacagttgttcgattgtagtttctagaactctcatgtcgagttcaataggaggcaaaccaatggggtcgctcatgaattagctagggtagccc 215  Q
    ||||||||||| ||||| ||   ||||||  ||||||||||||||||||||||||||||||||   ||||||||||||||||| ||||||||||||||||    
T  44839990 gcttgtagacaattgtttgacaatagttttcagaactctcatgtcgagttcaataggaggcaagttaatggggtcgctcatgagttagctagggtagccc 44839891  T
Q  216 catctcatgctaactcccacgtttatgatgatgt 249  Q
    ||||| |||||| |||| ||||||||||| ||||    
T  44839890 catctaatgctagctcctacgtttatgataatgt 44839857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 92 - 220
Target Start/End: Complemental strand, 51080829 - 51080701
Alignment:
Q  92 agtgaactaggttgtattattcaggcttgtagacagttgttcgattgtagtttctagaactctcatgtcgagttcaataggaggcaaaccaatggggtcg 191  Q
    |||||||| ||||||||||||   || ||||||||||||||  |   ||||||  | ||||||||||||||||| |||||||||||| | ||||||||||    
T  51080829 agtgaacttggttgtattattactgcatgtagacagttgtttcaggatagttttcaaaactctcatgtcgagtttaataggaggcaatctaatggggtcg 51080730  T
Q  192 ctcatgaattagctagggtagccccatct 220  Q
    ||||||||||||| |||||||||||||||    
T  51080729 ctcatgaattagcgagggtagccccatct 51080701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 183 - 249
Target Start/End: Complemental strand, 52823539 - 52823473
Alignment:
Q  183 atggggtcgctcatgaattagctagggtagccccatctcatgctaactcccacgtttatgatgatgt 249  Q
    ||||||||||||||||||||| ||||||||| ||||||||| |||||||| | ||||| ||||||||    
T  52823539 atggggtcgctcatgaattagttagggtagctccatctcatactaactcctatgtttacgatgatgt 52823473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 147 - 227
Target Start/End: Complemental strand, 39648459 - 39648379
Alignment:
Q  147 agaactctcatgtcgagttcaataggaggcaaaccaatggggtcgctcatgaattagctagggtagccccatctcatgcta 227  Q
    ||||||||| ||||||||| ||||| || ||| | |||  |||||||||||||||||||  ||||||||||||||||||||    
T  39648459 agaactctcgtgtcgagtttaatagaagtcaagctaattaggtcgctcatgaattagctcaggtagccccatctcatgcta 39648379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 151 - 215
Target Start/End: Original strand, 5811388 - 5811452
Alignment:
Q  151 ctctcatgtcgagttcaataggaggcaaaccaatggggtcgctcatgaattagctagggtagccc 215  Q
    ||||||||||||||| |||||||| ||||| |||||||| |||||| ||||||||| || |||||    
T  5811388 ctctcatgtcgagtttaataggagacaaacaaatggggtagctcattaattagctaaggcagccc 5811452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 147 - 205
Target Start/End: Original strand, 2114365 - 2114423
Alignment:
Q  147 agaactctcatgtcgagttcaataggaggcaaaccaatggggtcgctcatgaattagct 205  Q
    |||||||||||||||||||||| |||| | || | |||||||||||||| |||||||||    
T  2114365 agaactctcatgtcgagttcaacaggaaggaagcgaatggggtcgctcacgaattagct 2114423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 147 - 205
Target Start/End: Complemental strand, 3601323 - 3601265
Alignment:
Q  147 agaactctcatgtcgagttcaataggaggcaaaccaatggggtcgctcatgaattagct 205  Q
    |||||||||||||||||||||||||||||||| | |||| ||| ||||| || ||||||    
T  3601323 agaactctcatgtcgagttcaataggaggcaagcgaatgaggttgctcacgagttagct 3601265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 149 - 206
Target Start/End: Complemental strand, 26418845 - 26418788
Alignment:
Q  149 aactctcatgtcgagttcaataggaggcaaaccaatggggtcgctcatgaattagcta 206  Q
    ||||||||||||||||| | |||||||||| | |||| ||| ||||||||||||||||    
T  26418845 aactctcatgtcgagtttactaggaggcaagcaaatgaggttgctcatgaattagcta 26418788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 149 - 206
Target Start/End: Original strand, 32108435 - 32108492
Alignment:
Q  149 aactctcatgtcgagttcaataggaggcaaaccaatggggtcgctcatgaattagcta 206  Q
    ||||||||||||||||| | |||||||||| | |||| ||| ||||||||||||||||    
T  32108435 aactctcatgtcgagtttactaggaggcaagcaaatgaggttgctcatgaattagcta 32108492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 147 - 205
Target Start/End: Original strand, 17321884 - 17321942
Alignment:
Q  147 agaactctcatgtcgagttcaataggaggcaaaccaatggggtcgctcatgaattagct 205  Q
    |||||||||||||||||||||| ||||||||| | ||| |||| ||||| || ||||||    
T  17321884 agaactctcatgtcgagttcaacaggaggcaagcaaatagggtagctcacgagttagct 17321942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 198; Significance: 1e-108; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 16 - 249
Target Start/End: Original strand, 51976638 - 51976871
Alignment:
Q  16 tcattatgacaatgttgattttgttttggattgcaagtctgttgttgaacattttaattcaaacctaggtgatagcagtgaactaggttgtattattcag 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51976638 tcattatgacaatgttgattttgttttggattgcaagtctgttgttgaacattttaattcaaacctaggtgatagcagtgaactaggttgtattattcag 51976737  T
Q  116 gcttgtagacagttgttcgattgtagtttctagaactctcatgtcgagttcaataggaggcaaaccaatggggtcgctcatgaattagctagggtagccc 215  Q
    ||||||||| ||||||| ||||||| |||  |||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||| |    
T  51976738 gcttgtagaaagttgtttgattgtaattttcagaactctcatgccgagttcaataggaggcaagccaatggggtcgctcatgaattagctagggtagctc 51976837  T
Q  216 catctcatgctaactcccacgtttatgatgatgt 249  Q
    |||||||||||| |||||||||||||||||||||    
T  51976838 catctcatgctagctcccacgtttatgatgatgt 51976871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 16 - 249
Target Start/End: Original strand, 36684783 - 36685016
Alignment:
Q  16 tcattatgacaatgttgattttgttttggattgcaagtctgttgttgaacattttaattcaaacctaggtgatagcagtgaactaggttgtattattcag 115  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||    
T  36684783 tcattatgacaatgttgattttgttttggattgcaagtttgttgttgaacattttaattcaaacctaggtgatagtagtgaactaggttgtatcattcag 36684882  T
Q  116 gcttgtagacagttgttcgattgtagtttctagaactctcatgtcgagttcaataggaggcaaaccaatggggtcgctcatgaattagctagggtagccc 215  Q
    ||||||||||||||||||||||||| |||  |||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||    
T  36684883 gcttgtagacagttgttcgattgtaattttcagaactctcatgtcgagttcaataggaggcaagctaatggggtcgctcatgaattagctagggtagccc 36684982  T
Q  216 catctcatgctaactcccacgtttatgatgatgt 249  Q
    |||||||||||| ||| |||||||||||||||||    
T  36684983 catctcatgctagctctcacgtttatgatgatgt 36685016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 20 - 249
Target Start/End: Original strand, 8705594 - 8705823
Alignment:
Q  20 tatgacaatgttgattttgttttggattgcaagtctgttgttgaacattttaattcaaacctaggtgatagcagtgaactaggttgtattattcaggctt 119  Q
    |||||| ||||||||||||||||||||| ||||| ||||||||||| ||||||||||||||||| |||||| ||||||||||||||||||||||||||||    
T  8705594 tatgaccatgttgattttgttttggattccaagtatgttgttgaacgttttaattcaaacctagttgatagtagtgaactaggttgtattattcaggctt 8705693  T
Q  120 gtagacagttgttcgattgtagtttctagaactctcatgtcgagttcaataggaggcaaaccaatggggtcgctcatgaattagctagggtagccccatc 219  Q
    |||| |||||||| ||||||| |||  |||||||||||||||||||||||||||||||| | |||| ||||||| ||||||||| |||||||||||||||    
T  8705694 gtaggcagttgtttgattgtaattttcagaactctcatgtcgagttcaataggaggcaagctaatgaggtcgcttatgaattagttagggtagccccatc 8705793  T
Q  220 tcatgctaactcccacgtttatgatgatgt 249  Q
    |||| ||| |||||||||||||||||||||    
T  8705794 tcatactagctcccacgtttatgatgatgt 8705823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 20 - 249
Target Start/End: Original strand, 9057481 - 9057710
Alignment:
Q  20 tatgacaatgttgattttgttttggattgcaagtctgttgttgaacattttaattcaaacctaggtgatagcagtgaactaggttgtattattcaggctt 119  Q
    |||||| ||||||||||||||||||||| ||||| ||||||||||| ||||||||||||||||| |||||| ||||||||||||||||||||||||||||    
T  9057481 tatgaccatgttgattttgttttggattccaagtatgttgttgaacgttttaattcaaacctagttgatagtagtgaactaggttgtattattcaggctt 9057580  T
Q  120 gtagacagttgttcgattgtagtttctagaactctcatgtcgagttcaataggaggcaaaccaatggggtcgctcatgaattagctagggtagccccatc 219  Q
    |||| |||||||| ||||||| |||  |||||||||||||||||||||||||||||||| | |||| ||||||| ||||||||| |||||||||||||||    
T  9057581 gtaggcagttgtttgattgtaattttcagaactctcatgtcgagttcaataggaggcaagctaatgaggtcgcttatgaattagttagggtagccccatc 9057680  T
Q  220 tcatgctaactcccacgtttatgatgatgt 249  Q
    |||| ||| |||||||||||||||||||||    
T  9057681 tcatactagctcccacgtttatgatgatgt 9057710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 28 - 249
Target Start/End: Original strand, 45736356 - 45736577
Alignment:
Q  28 tgttgattttgttttggattgcaagtctgttgttgaacattttaattcaaacctaggtgatagcagtgaactaggttgtattattcaggcttgtagacag 127  Q
    |||||||||||||||||||| ||||| ||||||| ||| |||||||| ||| |||| ||||||||||||| |||||||||||||| ||| |||||| ||     
T  45736356 tgttgattttgttttggatttcaagtttgttgttcaacgttttaatttaaatctagatgatagcagtgaattaggttgtattatttaggtttgtaggcaa 45736455  T
Q  128 ttgttcgattgtagtttctagaactctcatgtcgagttcaataggaggcaaaccaatggggtcgctcatgaattagctagggtagccccatctcatgcta 227  Q
    ||||||||||||| |||  ||||||||||||||||||||||||||||||| |||||||||  ||||| | ||||||||||||||||| ||||||||||||    
T  45736456 ttgttcgattgtaattttcagaactctcatgtcgagttcaataggaggcagaccaatgggaacgctcgtaaattagctagggtagcctcatctcatgcta 45736555  T
Q  228 actcccacgtttatgatgatgt 249  Q
    ||||||||||||||||||||||    
T  45736556 actcccacgtttatgatgatgt 45736577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 16 - 246
Target Start/End: Complemental strand, 4978648 - 4978417
Alignment:
Q  16 tcattatgacaatgttgattttgttttggattgcaagtctgttgtt-gaacattttaattcaaacctaggtgatagcagtgaactaggttgtattattca 114  Q
    ||||| |||||||||| ||||||||||||||| ||| | ||||||| |||| |||||||||||||||||||||||  ||| ||||||||||||||||||     
T  4978648 tcattctgacaatgttaattttgttttggattccaaatatgttgtttgaacgttttaattcaaacctaggtgataatagtaaactaggttgtattattct 4978549  T
Q  115 ggcttgtagacagttgttcgattgtagtttctagaactctcatgtcgagttcaataggaggcaaaccaatggggtcgctcatgaattagctagggtagcc 214  Q
    ||||||||| || ||||||| || || |||  ||||||||||||||||||| |||| ||| ||| |||||| ||||| ||||||||||||||| ||||||    
T  4978548 ggcttgtaggcacttgttcggttataattttcagaactctcatgtcgagtttaatatgagacaagccaatgaggtcgttcatgaattagctagcgtagcc 4978449  T
Q  215 ccatctcatgctaactcccacgtttatgatga 246  Q
     |||||||||||||||| | | ||||||||||    
T  4978448 acatctcatgctaactcgcgcatttatgatga 4978417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 67 - 211
Target Start/End: Complemental strand, 49759100 - 49758956
Alignment:
Q  67 ttttaattcaaacctaggtgatagcagtgaactaggttgtattattcaggcttgtagacagttgttcgattgtagtttctagaactctcatgtcgagttc 166  Q
    |||||||||||||||||  ||||| |||||||||||||| ||||||||| ||||||| | |||| | | ||||| |||  |||||||| |||||| ||||    
T  49759100 ttttaattcaaacctagaggatagtagtgaactaggttgcattattcagacttgtaggctgttgcttgcttgtaattttcagaactcttatgtcgggttc 49759001  T
Q  167 aataggaggcaaaccaatggggtcgctcatgaattagctagggta 211  Q
    |||||||||||| | |||||| |||||||||||||  ||||||||    
T  49759000 aataggaggcaagctaatgggatcgctcatgaattgactagggta 49758956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 20 - 176
Target Start/End: Complemental strand, 26390956 - 26390800
Alignment:
Q  20 tatgacaatgttgattttgttttggattgcaagtctgttgttgaacattttaattcaaacctaggtgatagcagtgaactaggttgtattattcaggctt 119  Q
    ||||| ||||| || |||| |||||||| |||| |  |||| || | |||||| | ||||||||  ||||| |||||||||||||| ||||| || ||||    
T  26390956 tatgataatgtcgactttgctttggatttcaaggcacttgtagatcgttttaactgaaacctagaagatagtagtgaactaggttgcattatacaagctt 26390857  T
Q  120 gtagacagttgttcgattgtagtttctagaactctcatgtcgagttcaataggaggc 176  Q
    ||||||||||||| | ||||||||| || ||||||| ||||||||||||||||||||    
T  26390856 gtagacagttgtttgcttgtagtttttataactctcgtgtcgagttcaataggaggc 26390800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 95 - 219
Target Start/End: Original strand, 38998864 - 38998988
Alignment:
Q  95 gaactaggttgtattattcaggcttgtagacagttgttcgattgtagtttctagaactctcatgtcgagttcaataggaggcaaaccaatggggtcgctc 194  Q
    ||||| ||||||||||||  ||| ||||||||||||||  |   ||||||  | ||||||||||||||||| |||||||||||| | |||||||||||||    
T  38998864 gaacttggttgtattattacggcctgtagacagttgtttcaggatagttttcaaaactctcatgtcgagtttaataggaggcaagctaatggggtcgctc 38998963  T
Q  195 atgaattagctagggtagccccatc 219  Q
    | |||||||| ||||||||||||||    
T  38998964 acgaattagcgagggtagccccatc 38998988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 152 - 249
Target Start/End: Complemental strand, 47165442 - 47165345
Alignment:
Q  152 tctcatgtcgagttcaataggaggcaaaccaatggggtcgctcatgaattagctagggtagccccatctcatgctaactcccacgtttatgatgatgt 249  Q
    ||||| |||||||||||||||||||||  |||||||||||||| ||||||||  | || ||||||||||||||||| |||||||||||| | ||||||    
T  47165442 tctcacgtcgagttcaataggaggcaagtcaatggggtcgctcgtgaattaggaaaggcagccccatctcatgctagctcccacgtttacggtgatgt 47165345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 95 - 249
Target Start/End: Original strand, 37796562 - 37796716
Alignment:
Q  95 gaactaggttgtattattcaggcttgtagacagttgttcgattgtagtttctagaactctcatgtcgagttcaataggaggcaaaccaatggggtcgctc 194  Q
    ||||| ||||||||||||  ||| ||||||||||||||  |   ||||||  | ||| ||||||||||||| |||||||||||| | |||| ||||||||    
T  37796562 gaacttggttgtattattacggcctgtagacagttgtttcaggatagttttcaaaacactcatgtcgagtttaataggaggcaagctaatgaggtcgctc 37796661  T
Q  195 atgaattagctagggtagccccatctcatgctaactcccacgtttatgatgatgt 249  Q
    |  ||||||| ||||||||||||||| || ||| | ||  | |||||||||||||    
T  37796662 acaaattagcgagggtagccccatctgatcctagccccaccatttatgatgatgt 37796716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 149 - 206
Target Start/End: Complemental strand, 32073664 - 32073607
Alignment:
Q  149 aactctcatgtcgagttcaataggaggcaaaccaatggggtcgctcatgaattagcta 206  Q
    ||||||||||||||||| | |||||||||| | |||| ||| ||||||||||||||||    
T  32073664 aactctcatgtcgagtttactaggaggcaagcaaatgaggttgctcatgaattagcta 32073607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 182 - 249
Target Start/End: Complemental strand, 26390631 - 26390564
Alignment:
Q  182 aatggggtcgctcatgaattagctagggtagccccatctcatgctaactcccacgtttatgatgatgt 249  Q
    |||||| ||||||||||||||||    |||| ||| |||||||||||||| |||||||||||| ||||    
T  26390631 aatgggatcgctcatgaattagcacatgtagtcccgtctcatgctaactctcacgtttatgataatgt 26390564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 138 - 194
Target Start/End: Original strand, 20916409 - 20916465
Alignment:
Q  138 gtagtttctagaactctcatgtcgagttcaataggaggcaaaccaatggggtcgctc 194  Q
    |||||||  |||||||| |||| |||||||||||||||||| | |||| ||||||||    
T  20916409 gtagttttcagaactcttatgttgagttcaataggaggcaagcgaatgaggtcgctc 20916465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 138 - 194
Target Start/End: Original strand, 20925371 - 20925427
Alignment:
Q  138 gtagtttctagaactctcatgtcgagttcaataggaggcaaaccaatggggtcgctc 194  Q
    |||||||  |||||||| |||| |||||||||||||||||| | |||| ||||||||    
T  20925371 gtagttttcagaactcttatgttgagttcaataggaggcaagcgaatgaggtcgctc 20925427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 194; Significance: 1e-105; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 16 - 249
Target Start/End: Original strand, 18481111 - 18481344
Alignment:
Q  16 tcattatgacaatgttgattttgttttggattgcaagtctgttgttgaacattttaattcaaacctaggtgatagcagtgaactaggttgtattattcag 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18481111 tcattatgacaatgttgattttgttttggattgcaagtctgttgttgaacattttaattcaaacctaggtgatagcagtgaactaggttgtattattcag 18481210  T
Q  116 gcttgtagacagttgttcgattgtagtttctagaactctcatgtcgagttcaataggaggcaaaccaatggggtcgctcatgaattagctagggtagccc 215  Q
    ||||||||| ||||||||||||||| |||  ||||||||||||||||||||||||||||| ||  |||||||||| ||||| ||||||||||||||||||    
T  18481211 gcttgtagatagttgttcgattgtaattttcagaactctcatgtcgagttcaataggaggtaagtcaatggggtcactcataaattagctagggtagccc 18481310  T
Q  216 catctcatgctaactcccacgtttatgatgatgt 249  Q
    |||||||||||| |||||||||||||||||||||    
T  18481311 catctcatgctagctcccacgtttatgatgatgt 18481344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 116 - 249
Target Start/End: Original strand, 26440784 - 26440917
Alignment:
Q  116 gcttgtagacagttgttcgattgtagtttctagaactctcatgtcgagttcaataggaggcaaaccaatggggtcgctcatgaattagctagggtagccc 215  Q
    ||||||||||||||||| ||   |||||| ||||||||||||||||||||||||||||||||| | |||||||| |||||||| ||||||||||||||||    
T  26440784 gcttgtagacagttgtttgacaatagtttttagaactctcatgtcgagttcaataggaggcaagctaatggggttgctcatgagttagctagggtagccc 26440883  T
Q  216 catctcatgctaactcccacgtttatgatgatgt 249  Q
    ||||| |||||| ||| |||| ||||||| ||||    
T  26440884 catctaatgctagctctcacgattatgataatgt 26440917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 18 - 219
Target Start/End: Complemental strand, 32536357 - 32536156
Alignment:
Q  18 attatgacaatgttgattttgttttggattgcaagtctgttgttgaacattttaattcaaacctaggtgatagcagtgaactaggttgtattattcaggc 117  Q
    |||||||  |||| ||||||| |||||||| ||||| | |||| || |  ||| ||||||||||||  ||||  ||||||||||||||||||||||||||    
T  32536357 attatgatcatgtcgattttgctttggattacaagtttattgtagatcgctttcattcaaacctagacgataatagtgaactaggttgtattattcaggc 32536258  T
Q  118 ttgtagacagttgttcgattgtagtttctagaactctcatgtcgagttcaataggaggcaaaccaatggggtcgctcatgaattagctagggtagcccca 217  Q
    ||||| ||| ||| | | ||||| |||   ||||||| |||||||||||||| | |  |||   ||||||||||||| ||||||||||||||||||||||    
T  32536257 ttgtaaacaattgattgcttgtaattttatgaactcttatgtcgagttcaattgaaaacaagttaatggggtcgctcgtgaattagctagggtagcccca 32536158  T
Q  218 tc 219  Q
    ||    
T  32536157 tc 32536156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 147 - 249
Target Start/End: Original strand, 7251115 - 7251217
Alignment:
Q  147 agaactctcatgtcgagttcaataggaggcaaaccaatggggtcgctcatgaattagctagggtagccccatctcatgctaactcccacgtttatgatga 246  Q
    |||||||| |||||||||||||||||||||||||||||||| || |||||| |||| ||| |||||||||||||||||||| || ||| | ||||||| |    
T  7251115 agaactcttatgtcgagttcaataggaggcaaaccaatgggatcactcatgcattaactaaggtagccccatctcatgctagcttccatgattatgataa 7251214  T
Q  247 tgt 249  Q
    |||    
T  7251215 tgt 7251217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 149 - 218
Target Start/End: Complemental strand, 11911464 - 11911395
Alignment:
Q  149 aactctcatgtcgagttcaataggaggcaaaccaatggggtcgctcatgaattagctagggtagccccat 218  Q
    ||||||||||||||||||||||||||| |||| ||||||||| | || || |||||| ||| ||||||||    
T  11911464 aactctcatgtcgagttcaataggaggtaaacgaatggggtcccccacgagttagctcgggaagccccat 11911395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 186; Significance: 1e-101; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 16 - 249
Target Start/End: Complemental strand, 43989490 - 43989258
Alignment:
Q  16 tcattatgacaatgttgattttgttttggattgcaagtctgttgttgaacattttaattcaaacctaggtgatagcagtgaactaggttgtattattcag 115  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  43989490 tcattatgacaatgttgattttgttttggattgcaagtttgttgttgaacgttttaattcaaacctaggtgatagcagtgaactaggttgtattattcag 43989391  T
Q  116 gcttgtagacagttgttcgattgtagtttctagaactctcatgtcgagttcaataggaggcaaaccaatggggtcgctcatgaattagctagggtagccc 215  Q
    ||||| ||||| ||||||||||||| ||| |||||| |||||||||||||||||||||||||| |||||| ||||||||||||||||| |||||||||||    
T  43989390 gcttgcagacaattgttcgattgta-tttttagaacgctcatgtcgagttcaataggaggcaagccaatgaggtcgctcatgaattagttagggtagccc 43989292  T
Q  216 catctcatgctaactcccacgtttatgatgatgt 249  Q
    |||||||||||| |||||||||||||||||||||    
T  43989291 catctcatgctagctcccacgtttatgatgatgt 43989258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 68 - 249
Target Start/End: Complemental strand, 19316071 - 19315890
Alignment:
Q  68 tttaattcaaacctaggtgatagcagtgaactaggttgtattattcaggcttgtagacagttgttcgattgtagtttctagaactctcatgtcgagttca 167  Q
    ||||| |||||  ||| |||||| ||||| |||||||| ||||| || ||||||||| ||||||| | |   |||||  |||||||||||||||||||||    
T  19316071 tttaagtcaaatgtagatgatagtagtgagctaggttgcattatacatgcttgtagatagttgtttgttaacagttttcagaactctcatgtcgagttca 19315972  T
Q  168 ataggaggcaaaccaatggggtcgctcatgaattagctagggtagccccatctcatgctaactcccacgtttatgatgatgt 249  Q
    ||||||||||| ||||||| |||| ||||||||||||   |||||||||| || ||| || |||||||| ||||||| ||||    
T  19315971 ataggaggcaagccaatggagtcgttcatgaattagcacaggtagccccaccttatggtagctcccacgcttatgattatgt 19315890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 153 - 249
Target Start/End: Complemental strand, 43813267 - 43813171
Alignment:
Q  153 ctcatgtcgagttcaataggaggcaaaccaatggggtcgctcatgaattagctagggtagccccatctcatgctaactcccacgtttatgatgatgt 249  Q
    ||||||||||||||||||| || |||  ||||||||||| ||||||||||| ||||||||||||||||||| ||| ||| | ||||| |||||||||    
T  43813267 ctcatgtcgagttcaatagcagacaagtcaatggggtcgttcatgaattagttagggtagccccatctcatactagctctctcgtttttgatgatgt 43813171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 147 - 244
Target Start/End: Original strand, 1394134 - 1394232
Alignment:
Q  147 agaactctcatgtcgagttcaataggaggcaaaccaatggggtcgctcatgaattagctagggtag-ccccatctcatgctaactcccacgtttatgat 244  Q
    |||||||||||||||||||||||||||||||| | |||||||||| ||||||||||||    |||| |||||||| |||||| ||||||| | ||||||    
T  1394134 agaactctcatgtcgagttcaataggaggcaagctaatggggtcgttcatgaattagcacaagtagtccccatctaatgctagctcccacatctatgat 1394232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 147 - 189
Target Start/End: Complemental strand, 17283623 - 17283581
Alignment:
Q  147 agaactctcatgtcgagttcaataggaggcaaaccaatggggt 189  Q
    |||||||| ||||||||||||||||||||||||| ||||||||    
T  17283623 agaactcttatgtcgagttcaataggaggcaaacgaatggggt 17283581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 149 - 206
Target Start/End: Original strand, 13200849 - 13200906
Alignment:
Q  149 aactctcatgtcgagttcaataggaggcaaaccaatggggtcgctcatgaattagcta 206  Q
    ||||||||||||||||||| |||||||||| | |||| ||| |||||||| |||||||    
T  13200849 aactctcatgtcgagttcattaggaggcaagcaaatgaggttgctcatgagttagcta 13200906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 149 - 206
Target Start/End: Original strand, 47783000 - 47783057
Alignment:
Q  149 aactctcatgtcgagttcaataggaggcaaaccaatggggtcgctcatgaattagcta 206  Q
    ||||||||||||||||| | |||||||||| | |||| ||| ||||||||||||||||    
T  47783000 aactctcatgtcgagtttactaggaggcaagcaaatgaggttgctcatgaattagcta 47783057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 147 - 191
Target Start/End: Original strand, 9633067 - 9633111
Alignment:
Q  147 agaactctcatgtcgagttcaataggaggcaaaccaatggggtcg 191  Q
    ||||||||||||||||||||||||||||||||   ||||||||||    
T  9633067 agaactctcatgtcgagttcaataggaggcaagtgaatggggtcg 9633111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 147 - 205
Target Start/End: Original strand, 35096917 - 35096975
Alignment:
Q  147 agaactctcatgtcgagttcaataggaggcaaaccaatggggtcgctcatgaattagct 205  Q
    ||||||||||||||||||||||||| |||||| | ||| |||| ||||| || ||||||    
T  35096917 agaactctcatgtcgagttcaatagaaggcaagcaaatagggttgctcacgagttagct 35096975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 147 - 195
Target Start/End: Complemental strand, 1479333 - 1479285
Alignment:
Q  147 agaactctcatgtcgagttcaataggaggcaaaccaatggggtcgctca 195  Q
    ||||||||||| ||||||||||||||||||||   ||||||||| ||||    
T  1479333 agaactctcatatcgagttcaataggaggcaagtaaatggggtcactca 1479285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 174; Significance: 1e-93; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 16 - 249
Target Start/End: Original strand, 942571 - 942804
Alignment:
Q  16 tcattatgacaatgttgattttgttttggattgcaagtctgttgttgaacattttaattcaaacctaggtgatagcagtgaactaggttgtattattcag 115  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||    
T  942571 tcattatgacaatgttgattttgttttggattccaagtctgttgttgaacattttaagtcaaacctaggtgatagtagtgaactaggttgtattattcag 942670  T
Q  116 gcttgtagacagttgttcgattgtagtttctagaactctcatgtcgagttcaataggaggcaaaccaatggggtcgctcatgaattagctagggtagccc 215  Q
    |||||||| |||||||||||||||| |||  |||||||| ||||||||||||||||||||||| ||||||||||||||| |||||||||||||  | |||    
T  942671 gcttgtaggcagttgttcgattgtaattttcagaactctaatgtcgagttcaataggaggcaagccaatggggtcgctcgtgaattagctaggacaaccc 942770  T
Q  216 catctcatgctaactcccacgtttatgatgatgt 249  Q
    |||||||||||| |||||||||||| ||||||||    
T  942771 catctcatgctatctcccacgtttacgatgatgt 942804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 147 - 249
Target Start/End: Original strand, 4513081 - 4513183
Alignment:
Q  147 agaactctcatgtcgagttcaataggaggcaaaccaatggggtcgctcatgaattagctagggtagccccatctcatgctaactcccacgtttatgatga 246  Q
    |||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||| ||| |||||| ||||||||| |    
T  4513081 agaactctcatgtcgagttcaataggaggcaagccaatggggtcgctaatgaattagctagggtagccccatctcatactagctcccatgtttatgataa 4513180  T
Q  247 tgt 249  Q
    |||    
T  4513181 tgt 4513183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 149 - 220
Target Start/End: Original strand, 19047098 - 19047169
Alignment:
Q  149 aactctcatgtcgagttcaataggaggcaaaccaatggggtcgctcatgaattagctagggtagccccatct 220  Q
    ||||||||||||||||| |||||||||||| | |||| ||||||||| |||||||| |||||||||| ||||    
T  19047098 aactctcatgtcgagtttaataggaggcaagctaatgtggtcgctcacgaattagcgagggtagccctatct 19047169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 149 - 247
Target Start/End: Complemental strand, 13757601 - 13757503
Alignment:
Q  149 aactctcatgtcgagttcaataggaggcaaaccaatggggtcgctcatgaattagctagggtagccccatctcatgctaactcccacgtttatgatgat 247  Q
    ||||||||||| ||||| |||| || |||||| |||| ||||||||| |||||||||||| |||| |||| | || ||| |||| |  |||||||||||    
T  13757601 aactctcatgttgagtttaataagaagcaaactaatgaggtcgctcacgaattagctaggatagctccatataatcctagctccaatttttatgatgat 13757503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 149 - 206
Target Start/End: Original strand, 15950809 - 15950866
Alignment:
Q  149 aactctcatgtcgagttcaataggaggcaaaccaatggggtcgctcatgaattagcta 206  Q
    ||||||||||||||||| | |||||||||| | |||| ||| ||||||||||||||||    
T  15950809 aactctcatgtcgagtttactaggaggcaagcaaatgaggttgctcatgaattagcta 15950866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 165; Significance: 2e-88; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 53 - 249
Target Start/End: Complemental strand, 41197552 - 41197356
Alignment:
Q  53 tctgttgttgaacattttaattcaaacctaggtgatagcagtgaactaggttgtattattcaggcttgtagacagttgttcgattgtagtttctagaact 152  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||| |||  ||||||    
T  41197552 tctgttgttgaacattttaattcaaacctaggtgatagcagtgaactaggttgtattatttaggcttatagacagttgttcgattgtaattttcagaact 41197453  T
Q  153 ctcatgtcgagttcaataggaggcaaaccaatggggtcgctcatgaattagctagggtagccccatctcatgctaactcccacgtttatgatgatgt 249  Q
    || ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  41197452 cttatgtcgagttcaataggaggcaagccaatggggtcgctcatgaattagctagggtagccccatctcatgctagctcccacgtttatgatgatgt 41197356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 27 - 249
Target Start/End: Complemental strand, 36779622 - 36779403
Alignment:
Q  27 atgttgattttgttttggattgcaagtctgttgttgaacattttaattcaaacctaggtgatagcagtgaactaggttgtattattcaggcttgtagaca 126  Q
    ||||||||||| ||||||||| ||||||| ||||||||| ||||||||||||||||  ||| || ||||||||||||||||||||| |||||||||| ||    
T  36779622 atgttgattttattttggattccaagtctattgttgaacgttttaattcaaacctaattgagagtagtgaactaggttgtattattaaggcttgtaggca 36779523  T
Q  127 gttgttcgattgtagtttctagaactctcatgtcgagttcaataggaggcaaaccaatggggtcgctcatgaattagctagggtagccccatctcatgct 226  Q
    |||||| | ||||| ||   |||||||||||||||||| ||||||||||||| ||||| | ||| |||||| |||||||||||||| ||||||| ||| |    
T  36779522 gttgtttggttgtaatt--cagaactctcatgtcgagtacaataggaggcaagccaatagtgtcactcatggattagctagggtagtcccatct-atgtt 36779426  T
Q  227 aactcccacgtttatgatgatgt 249  Q
    | ||||||||| |||||||||||    
T  36779425 agctcccacgtctatgatgatgt 36779403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 119 - 249
Target Start/End: Complemental strand, 30376557 - 30376427
Alignment:
Q  119 tgtagacagttgttcgattgtagtttctagaactctcatgtcgagttcaataggaggcaaaccaatggggtcgctcatgaattagctagggtagccccat 218  Q
    ||||| ||||||||||||| || |||  | |||||| ||||||||||||||||||||||| ||||| ||||||||||||||||||||| ||||||| |||    
T  30376557 tgtaggcagttgttcgattataattttcaaaactcttatgtcgagttcaataggaggcaagccaatagggtcgctcatgaattagctacggtagcctcat 30376458  T
Q  219 ctcatgctaactcccacgtttatgatgatgt 249  Q
    ||||||||| |||| ||||||||||||||||    
T  30376457 ctcatgctagctccaacgtttatgatgatgt 30376427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 92 - 248
Target Start/End: Original strand, 34905529 - 34905685
Alignment:
Q  92 agtgaactaggttgtattattcaggcttgtagacagttgttcgattgtagtttctagaactctcatgtcgagttcaataggaggcaaaccaatggggtcg 191  Q
    ||||| ||||||||| |||| || ||||||||||||||||| | |  ||||||  ||||||||  ||| |||||||||||||| |||||||||| |||||    
T  34905529 agtgagctaggttgtgttatacatgcttgtagacagttgtttgttaatagttttcagaactcttgtgttgagttcaataggagacaaaccaatgaggtcg 34905628  T
Q  192 ctcatgaattagctagggtagccccatctcatgctaactcccacgtttatgatgatg 248  Q
    |||||||||||||    ||||||| |||||||||||||||||| ||||| |||||||    
T  34905629 ctcatgaattagcccaagtagcccgatctcatgctaactcccaagtttacgatgatg 34905685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 197 - 249
Target Start/End: Complemental strand, 12378660 - 12378608
Alignment:
Q  197 gaattagctagggtagccccatctcatgctaactcccacgtttatgatgatgt 249  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  12378660 gaattagctagggtagccccatctcatgctagctcccacgtttatgatgatgt 12378608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 103 - 219
Target Start/End: Complemental strand, 14857068 - 14856952
Alignment:
Q  103 ttgtattattcaggcttgtagacagttgttcgattgtagtttctagaactctcatgtcgagttcaataggaggcaaaccaatggggtcgctcatgaatta 202  Q
    |||||||||| | |||| ||||||||||||| ||   || ||  | ||||||||||||||||| |||| ||||||||| |||| | ||||||||||||||    
T  14857068 ttgtattattaatgcttctagacagttgttccatgaaagctttcaaaactctcatgtcgagtttaatatgaggcaaacaaatgtgatcgctcatgaatta 14856969  T
Q  203 gctagggtagccccatc 219  Q
    |||| || | |||||||    
T  14856968 gctaaggcatccccatc 14856952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 147 - 249
Target Start/End: Complemental strand, 12714949 - 12714847
Alignment:
Q  147 agaactctcatgtcgagttcaataggaggcaaaccaatggggtcgctcatgaattagctagggtagccccatctcatgctaactcccacgtttatgatga 246  Q
    ||||||||||||| | |||||| |||| |||| | |||||||||| |||| |||||||   |||| ||||||| ||||||| ||| || |||||||||||    
T  12714949 agaactctcatgttgggttcaaaaggaagcaacctaatggggtcgttcataaattagcagaggtaaccccatcacatgctagctctcatgtttatgatga 12714850  T
Q  247 tgt 249  Q
    |||    
T  12714849 tgt 12714847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 147 - 249
Target Start/End: Complemental strand, 12776180 - 12776078
Alignment:
Q  147 agaactctcatgtcgagttcaataggaggcaaaccaatggggtcgctcatgaattagctagggtagccccatctcatgctaactcccacgtttatgatga 246  Q
    ||||||||||||| | |||||| |||| |||| | |||||||||| |||| |||||||   |||| ||||||| ||||||| ||| || |||||||||||    
T  12776180 agaactctcatgttgggttcaaaaggaagcaacctaatggggtcgttcataaattagcagaggtaaccccatcacatgctagctctcatgtttatgatga 12776081  T
Q  247 tgt 249  Q
    |||    
T  12776080 tgt 12776078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 147 - 240
Target Start/End: Original strand, 29985437 - 29985530
Alignment:
Q  147 agaactctcatgtcgagttcaataggaggcaaaccaatggggtcgctcatgaattagctagggtagccccatctcatgctaactcccacgttta 240  Q
    ||||||||||||||||||||||||| || ||| | |||| ||||| ||| || ||||||  |||||||| |  ||||| || ||||||| ||||    
T  29985437 agaactctcatgtcgagttcaatagaagacaagctaatgaggtcgttcacgagttagctcaggtagccctaggtcatgttagctcccacattta 29985530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 188 - 249
Target Start/End: Original strand, 39714874 - 39714935
Alignment:
Q  188 gtcgctcatgaattagctagggtagccccatctcatgctaactcccacgtttatgatgatgt 249  Q
    |||||||||||||||| ||| ||||||||| || ||  || ||| |||||||||||||||||    
T  39714874 gtcgctcatgaattagttagtgtagccccaccttatattagctctcacgtttatgatgatgt 39714935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 147 - 195
Target Start/End: Original strand, 34530 - 34578
Alignment:
Q  147 agaactctcatgtcgagttcaataggaggcaaaccaatggggtcgctca 195  Q
    ||||||||||||||||||| ||||||| |||| |||||  |||||||||    
T  34530 agaactctcatgtcgagtttaataggaagcaagccaatatggtcgctca 34578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 154; Significance: 9e-82; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 154; E-Value: 9e-82
Query Start/End: Original strand, 16 - 249
Target Start/End: Original strand, 23820401 - 23820634
Alignment:
Q  16 tcattatgacaatgttgattttgttttggattgcaagtctgttgttgaacattttaattcaaacctaggtgatagcagtgaactaggttgtattattcag 115  Q
    |||||||||| ||||| ||||||||||||||| |||||||||||||| ||| ||||||||||||||||||||||| ||||||||||||||||| ||||||    
T  23820401 tcattatgaccatgttaattttgttttggattccaagtctgttgttgtacactttaattcaaacctaggtgatagtagtgaactaggttgtatcattcag 23820500  T
Q  116 gcttgtagacagttgttcgattgtagtttctagaactctcatgtcgagttcaataggaggcaaaccaatggggtcgctcatgaattagctagggtagccc 215  Q
    | |||||| |||||||| ||||||| |||  ||||||||||| |||||||||||||||||||| |||||||||||||||||||||||| ||||||||  |    
T  23820501 gtttgtaggcagttgtttgattgtaattttcagaactctcatatcgagttcaataggaggcaagccaatggggtcgctcatgaattagatagggtagatc 23820600  T
Q  216 catctcatgctaactcccacgtttatgatgatgt 249  Q
    |||||||||||| ||||||| |||||||||||||    
T  23820601 catctcatgctagctcccacatttatgatgatgt 23820634  T

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Target: chr7; HSP #2
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 20 - 249
Target Start/End: Complemental strand, 24808980 - 24808771
Alignment:
Q  20 tatgacaatgttgattttgttttggattgcaagtctgttgttgaacattttaattcaaacctaggtgatagcagtgaactaggttgtattattcaggctt 119  Q
    |||||| |||||||||||||||| |||| ||||||||||||||| | ||||||||||||||||| |||||| ||||||||||||||||||||||||||||    
T  24808980 tatgaccatgttgattttgttttagattccaagtctgttgttgatcgttttaattcaaacctagttgatagtagtgaactaggttgtattattcaggctt 24808881  T
Q  120 gtagacagttgttcgattgtagtttctagaactctcatgtcgagttcaataggaggcaaaccaatggggtcgctcatgaattagctagggtagccccatc 219  Q
    |||| |||||||| | ||||         |||        | ||||||||||||||||| ||||||||| | ||||||||||||||||| ||||||||||    
T  24808880 gtaggcagttgtttggttgt---------aac--------ctagttcaataggaggcaagccaatggggccactcatgaattagctaggatagccccatc 24808798  T
Q  220 tcatgctaactcccacgtttatgatgatgt 249  Q
    ||||||||    ||||||||||||||||||    
T  24808797 tcatgcta---gccacgtttatgatgatgt 24808771  T

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Target: chr7; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 116 - 249
Target Start/End: Original strand, 21118373 - 21118505
Alignment:
Q  116 gcttgtagacagttgttcgattgtagtttctagaactctcatgtcgagttcaataggaggcaaaccaatggggtcgctcatgaattagctagggtagccc 215  Q
    ||||||||||||||||| ||   ||||||  |||||||||||||||||||||||||||||||| | |||| |||| ||||||  |||||||||||||| |    
T  21118373 gcttgtagacagttgtttgacaatagttttcagaactctcatgtcgagttcaataggaggcaagctaatgaggtcactcatg-gttagctagggtagcac 21118471  T
Q  216 catctcatgctaactcccacgtttatgatgatgt 249  Q
    |||||  ||||| |||| ||||||||||| ||||    
T  21118472 catctattgctagctccaacgtttatgataatgt 21118505  T

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Target: chr7; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 147 - 251
Target Start/End: Complemental strand, 40901907 - 40901803
Alignment:
Q  147 agaactctcatgtcgagttcaataggaggcaaaccaatggggtcgctcatgaattagctagggtagccccatctcatgctaactcccacgtttatgatga 246  Q
    ||||||||||||||||||| |||||||||||||| |||  |||||||||||||||| |   |||||| ||||||||||||| ||||||  | ||||||||    
T  40901907 agaactctcatgtcgagttgaataggaggcaaactaatatggtcgctcatgaattaacacaggtagctccatctcatgctagctcccatatctatgatga 40901808  T
Q  247 tgtcc 251  Q
    |||||    
T  40901807 tgtcc 40901803  T

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Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 149 - 205
Target Start/End: Complemental strand, 10325166 - 10325110
Alignment:
Q  149 aactctcatgtcgagttcaataggaggcaaaccaatggggtcgctcatgaattagct 205  Q
    ||||||||||||||||| |||||||||||||| |||| |||||||||||| ||||||    
T  10325166 aactctcatgtcgagtttaataggaggcaaacgaatgaggtcgctcatgagttagct 10325110  T

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Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 147 - 195
Target Start/End: Original strand, 12980739 - 12980787
Alignment:
Q  147 agaactctcatgtcgagttcaataggaggcaaaccaatggggtcgctca 195  Q
    |||||||||||||||||||||| ||||||||||| ||||||||||||||    
T  12980739 agaactctcatgtcgagttcaacaggaggcaaacgaatggggtcgctca 12980787  T

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Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 146 - 205
Target Start/End: Original strand, 20492488 - 20492547
Alignment:
Q  146 tagaactctcatgtcgagttcaataggaggcaaaccaatggggtcgctcatgaattagct 205  Q
    |||||||||||| ||||||| |||||||||||| | ||| |||||||||| |||||||||    
T  20492488 tagaactctcatctcgagtttaataggaggcaagcgaatagggtcgctcacgaattagct 20492547  T

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Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 149 - 206
Target Start/End: Original strand, 29526837 - 29526894
Alignment:
Q  149 aactctcatgtcgagttcaataggaggcaaaccaatggggtcgctcatgaattagcta 206  Q
    ||||||||||||||||| | |||||||||| | |||| ||| ||||||||||||||||    
T  29526837 aactctcatgtcgagtttactaggaggcaagcaaatgaggttgctcatgaattagcta 29526894  T

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Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 149 - 203
Target Start/End: Complemental strand, 8321246 - 8321192
Alignment:
Q  149 aactctcatgtcgagttcaataggaggcaaaccaatggggtcgctcatgaattag 203  Q
    |||||||||||||| || |||| ||| ||||| || |||||||||||||||||||    
T  8321246 aactctcatgtcgaatttaatacgagacaaacaaacggggtcgctcatgaattag 8321192  T

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Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 149 - 206
Target Start/End: Complemental strand, 21588208 - 21588151
Alignment:
Q  149 aactctcatgtcgagttcaataggaggcaaaccaatggggtcgctcatgaattagcta 206  Q
    ||||||||||||||||| | |||||||||| | |||| ||| || |||||||||||||    
T  21588208 aactctcatgtcgagtttattaggaggcaatcaaatgaggttgcacatgaattagcta 21588151  T

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Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 121 - 201
Target Start/End: Complemental strand, 42029943 - 42029863
Alignment:
Q  121 tagacagttgttcgattgtagtttctagaactctcatgtcgagttcaataggaggcaaaccaatggggtcgctcatgaatt 201  Q
    ||||||| ||||| ||  ||||||| | ||||||||||| || || |||| ||||||||  ||||||||||||| ||||||    
T  42029943 tagacagatgttccataatagtttcaaaaactctcatgttgaatttaatatgaggcaaattaatggggtcgctcgtgaatt 42029863  T

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Target: scaffold0041 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 147 - 251
Target Start/End: Original strand, 48111 - 48215
Alignment:
Q  147 agaactctcatgtcgagttcaataggaggcaaaccaatggggtcgctcatgaattagctagggtagccccatctcatgctaactcccacgtttatgatga 246  Q
    ||||||||||||||||||| |||||||||||||| |||  |||||||||||||||| |   |||||| ||||||||||||| ||||||  | ||||||||    
T  48111 agaactctcatgtcgagttgaataggaggcaaactaatatggtcgctcatgaattaacacaggtagctccatctcatgctagctcccatatctatgatga 48210  T
Q  247 tgtcc 251  Q
    |||||    
T  48211 tgtcc 48215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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