View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6334_high_5 (Length: 214)

Name: NF6334_high_5
Description: NF6334
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6334_high_5
NF6334_high_5
[»] chr1 (3 HSPs)
chr1 (135-198)||(999959-1000022)
chr1 (13-89)||(999837-999913)
chr1 (135-197)||(6969199-6969261)


Alignment Details
Target: chr1 (Bit Score: 64; Significance: 4e-28; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 135 - 198
Target Start/End: Original strand, 999959 - 1000022
Alignment:
Q  135 ttagcacattaatctaacttatattaatgtaaatcaagacactaatgtaagcatagaaatagat 198  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  999959 ttagcacattaatctaacttatattaatgtaaatcaagacactaatgtaagcatagaaatagat 1000022  T

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Target: chr1; HSP #2
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 13 - 89
Target Start/End: Original strand, 999837 - 999913
Alignment:
Q  13 aatatccaaagaacgactttagaagtattgcattatgattttagtacctttgagttttcaacttacttagagttatg 89  Q
    |||||||||||||||| |||||||||| |||||||||||| ||||||||||||||||||||||||| ||||||||||    
T  999837 aatatccaaagaacgaatttagaagtactgcattatgattatagtacctttgagttttcaacttacatagagttatg 999913  T

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Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 135 - 197
Target Start/End: Complemental strand, 6969261 - 6969199
Alignment:
Q  135 ttagcacattaatctaacttatattaatgtaaatcaagacactaatgtaagcatagaaataga 197  Q
    |||||| |||||||||||||||| ||| |||||| ||||| | ||||||||||||||||||||    
T  6969261 ttagcatattaatctaacttataataaagtaaattaagactcgaatgtaagcatagaaataga 6969199  T

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