View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6334_low_1 (Length: 902)
Name: NF6334_low_1
Description: NF6334
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6334_low_1 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 825; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 825; E-Value: 0
Query Start/End: Original strand, 9 - 886
Target Start/End: Original strand, 5949127 - 5950004
Alignment:
| Q |
9 |
acatcatcaaattttgtgcgtgacccaatgaatcagtggacgcgatttttaatatatcgagactcgttcaaattgcaacaaaagtacaaaaatacagtga |
108 |
Q |
| |
|
|||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5949127 |
acatcatcaaattttgtgtgagacccaatgaatcagtggacgcgatttttaatatatcgagactcgttcaaattgcaacaaaagtacaaaaatacagtga |
5949226 |
T |
|
| Q |
109 |
aatgtgtgttagagagtgtttttcaaaatttctattatttataattaaatttttctctttgttggtctatgcagcatgttaaattaaagtatataattca |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5949227 |
aatgtgtgttagagagtgtttttcaaaatttctattatttataattaaatttttgtctttgttggtctatgcagcatgttaaattaaagtatataattca |
5949326 |
T |
|
| Q |
209 |
tgttggtgattagnnnnnnncaacatttgtggttttgatgcagtttccattactttctagaagtggactactaaagaaactaattgcagagtccacaagt |
308 |
Q |
| |
|
||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5949327 |
tgttggtgattagtttttttcaacatttgtgattttgatgcagtttccattactttctagaagtggactactaaagaaactaattgcagagtccacaagt |
5949426 |
T |
|
| Q |
309 |
gaggatggatcaagtagtattttgcaacttcatgatgttcctggtggagccaaaacatttgagctcataacaaaattttgctatggtgcgaaattagaaa |
408 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
5949427 |
gaggatggatcaagtagtattttgcaacttcatgatgttcctggtggagccaaaacatttgagctcataacaaaattttgctatggtgtgaaattagaaa |
5949526 |
T |
|
| Q |
409 |
tcacagcattgaatgtagttagtctaagatgtgcagcagagcatctccaaatgactgaaaactatggtgcagacaatcttattggttacacagaatcttt |
508 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5949527 |
tcacagcattgaatgtagttagtctaagatgtgcagcagagcatctccaaatgactgaaaactatggtgcagacaatcttattggttacacagaatcttt |
5949626 |
T |
|
| Q |
509 |
tctaaatgaagttttcagcaattggccagactccatcaaagcgctcgagacgtgcgaggaagtgcaaaactttgcagaagatctccatattttttctaga |
608 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5949627 |
tctaaatgaagttttcagcaattggccagactccatcaaagcgctcgagacatgcgaggaagtgcaaaactttgcagaagatctccatattttttctaga |
5949726 |
T |
|
| Q |
609 |
tgcattgattccttggctatgaaggcttgttcggatccagatttgttcaattggcaagtgacaggccgtaatgacgcgaaaaatcaagaggaacatgagt |
708 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5949727 |
tgcattgattccttggctatgaaggcttgttcggatccagatttgttcaattggcaagtgacaggccgtaatgacgcgaaaaatcaagaggaacatgagt |
5949826 |
T |
|
| Q |
709 |
tgttgaatggaatgtcttgtgagagtaaaacacagcctgttggtgataattggtggttttatgatgtgtctttgttgagcctaccattatataaaagatt |
808 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5949827 |
tgttgaatggaatgtcttgtgagagtaaaccacagtctgttggtgataattggtggttttatgatgtgtctttgttgagcctaccattatataaaagatt |
5949926 |
T |
|
| Q |
809 |
gattttggctattgaatcaaaaggaatgaaatcggagactattgctgcatctcttatatattaccttaggcggtttct |
886 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5949927 |
gattttggctattgaatcaaaaggaatgaaatcggagactattgctgcatctcttatatattaccttaggcggtttct |
5950004 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 108; Significance: 9e-54; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 108; E-Value: 9e-54
Query Start/End: Original strand, 250 - 477
Target Start/End: Complemental strand, 28321551 - 28321324
Alignment:
| Q |
250 |
agtttccattactttctagaagtggactactaaagaaactaattgcagagtccacaagtgaggatggatcaagtagtattttgcaacttcatgatgttcc |
349 |
Q |
| |
|
|||||||||| || |||||||||||| ||||||||||||| |||| || ||||||| ||| |||||||||| | |||||| |||||||||||||| || |
|
|
| T |
28321551 |
agtttccattgctctctagaagtggattactaaagaaactttttgctgactccacaaatgaagatggatcaaattctattttacaacttcatgatgtacc |
28321452 |
T |
|
| Q |
350 |
tggtggagccaaaacatttgagctcataacaaaattttgctatggtgcgaaattagaaatcacagcattgaatgtagttagtctaagatgtgcagcagag |
449 |
Q |
| |
|
|||||||| ||||||||||||| |||||||||| ||||||||||||| ||| ||||||||||| |||| ||||| ||||||||||||||||||||||| |
|
|
| T |
28321451 |
tggtggagacaaaacatttgagatcataacaaagttttgctatggtgtaaaactagaaatcacaccattaaatgtggttagtctaagatgtgcagcagaa |
28321352 |
T |
|
| Q |
450 |
catctccaaatgactgaaaactatggtg |
477 |
Q |
| |
|
|| | ||||||| ||| || ||||||| |
|
|
| T |
28321351 |
tatttacaaatgaatgagaattatggtg |
28321324 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University