View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6334_low_2 (Length: 858)
Name: NF6334_low_2
Description: NF6334
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6334_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 372; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 19 - 464
Target Start/End: Original strand, 37753946 - 37754392
Alignment:
| Q |
19 |
cactactgcagacctccgtcgtgtttcatcaactccggccgtcattctggatccacctcggatcatgaagcattatnnnnnnnnnnnnnnnnn-catcgt |
117 |
Q |
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| T |
37753946 |
cactactgcagacctccgtcgtgtttcatcaactccggccgtcattctggatccacctcggatcatgaagcattataaaaaaaaataaaaataacatcgt |
37754045 |
T |
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| Q |
118 |
ggatagttatttaacttgataatatttgctgagtatagaatacttttttattttggcataaatcttaggtcatccaccagcattagaacgttactagtag |
217 |
Q |
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| T |
37754046 |
ggatagttatttaacttgataatatttgctgagtatagaatactttttgattttggcataaatcttaggtcatccaccagcattagaacgttactagtag |
37754145 |
T |
|
| Q |
218 |
atatagatgctcaaaagctcacagtttgtccacaataccgcctgaccacatccgaattaaagcaaagccactatctttttctcaccccttatctcctctt |
317 |
Q |
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| T |
37754146 |
atatagattgtcaaaagctcacagtttgtccacaataccgcctgaccacatccgaattaaagcaaagccactatctttttctcaccccttatctcctctt |
37754245 |
T |
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| Q |
318 |
ttacttgttatattcaaaatcttccattggagcaaaatgttaatttgttccattgaaaaagttaatacctctcaagcctaattttcctactctgaaattg |
417 |
Q |
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| T |
37754246 |
ttacttgttatattcaaaatcttccattggagcaaaatgttaatttgttccattgaaaaagttaatacctctcaagcctaattttcctactctgaaattg |
37754345 |
T |
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| Q |
418 |
ataactaccctccaacacatggtttgtgcaatggtcagtatggaatc |
464 |
Q |
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| T |
37754346 |
ataactaccctccaacacatggtttgtgcaatgggcagtatggaatc |
37754392 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 460 - 843
Target Start/End: Original strand, 37754430 - 37754812
Alignment:
| Q |
460 |
gaatcacatgtgcacaatttcaattgaagggtatccatgtgttccagtatttgtcatgcacataagcacattcatttttaggactttgggaaacatatat |
559 |
Q |
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| T |
37754430 |
gaatcacatgtgcacaatttcaattgaagggtatccatgtgttctagtatttgtcatgcacataagcacattcatttttaggactttgggaaacatatat |
37754529 |
T |
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| Q |
560 |
atagagatgcagtaaaaagcatattctccatattgttatccagccgacaatatatttccatttttcaaatcaatccttaaagacaaagtaaacatctaat |
659 |
Q |
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| T |
37754530 |
atagagatgcagtaaaaagcatattctccatattgttatccagccgacaagatatttccatttttcaaatcaatccttaaagacaaagt-aacatctaat |
37754628 |
T |
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| Q |
660 |
ccaacatcnnnnnnnnctttaccatatcattccagcttggccctctttcttttttgacacctttttctctccttcccacttatctcctttatctaaagtt |
759 |
Q |
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| T |
37754629 |
ccaacatcttttttttctttaccatatcattccagcttggccctctttcttttttgacacctttttctctccttcccacttatctcctttatctaaagtt |
37754728 |
T |
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| Q |
760 |
atttgctatgtctttaaaacactgatcctgtatatatcaatcacactcaaatttcaacaagatcattacacaatactctctgat |
843 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||| |
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| T |
37754729 |
atttgctatgtctttaaaacactgatcctgtatatatcaatcacactgaaatttcaacaatatcattacacaatactctctgat |
37754812 |
T |
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