View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6334_low_4 (Length: 354)
Name: NF6334_low_4
Description: NF6334
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6334_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 169; Significance: 1e-90; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 150 - 338
Target Start/End: Complemental strand, 27210922 - 27210734
Alignment:
| Q |
150 |
catacaaaatatattgacatgcaaaagttagttcaataaatcaatctatcatttaaagataaaaataaaacctaaaaataagatcatgtatagatagaat |
249 |
Q |
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| T |
27210922 |
catacaaaatatattgacatgcaaaagttagttcaataaatcaatctaacattgaaagataaaaataaaacctaaaaataagatcatgtatagacagaat |
27210823 |
T |
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| Q |
250 |
agcaagtacgttacatcaacaaagcagtcgtggaaatggaggcgaaggagagatgctccgatgcgattttctttggcaatcgctgtttt |
338 |
Q |
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| T |
27210822 |
agcaagtacgttacatcaacaaagcagtcgtggaagtggaggcgaaggagagatgctccgatgcgattttctttggcaaccgctgtttt |
27210734 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 12 - 93
Target Start/End: Complemental strand, 27211051 - 27210970
Alignment:
| Q |
12 |
aatactagtaataatgcatctaatcatttgacattgaacctatatttgaggacgaaagaattattagttttgtgggtatata |
93 |
Q |
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| T |
27211051 |
aataatagtaataatgcatctaatcatttggcattgaacctatatttgaggacgaaagaattattagttttgtgggtatata |
27210970 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 97 - 128
Target Start/End: Complemental strand, 27210943 - 27210912
Alignment:
| Q |
97 |
cacagtttttcgtttgtcatgcatacaaaata |
128 |
Q |
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| T |
27210943 |
cacagtttttcgtttgtcatgcatacaaaata |
27210912 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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