View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6334_low_5 (Length: 275)
Name: NF6334_low_5
Description: NF6334
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6334_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 238; Significance: 1e-132; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 20 - 261
Target Start/End: Original strand, 1814983 - 1815224
Alignment:
| Q |
20 |
cgcggcgtgtcctttgagatgaaaagctgctatatcatacgctgctgctgccatttgtggttcttcatagctccctaaccatattctgctcttcttacct |
119 |
Q |
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| T |
1814983 |
cgcggcgtgtcctttgagatgaaaagctgctatatcatacgctgctgctgccatttgtggttcttcatagctccctaaccatattctgctcttcttacct |
1815082 |
T |
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| Q |
120 |
ggctctctaatttctgatacaaatttcccccattttcttttcctaactcctatataggatgttggaggagtaatatttgcatgttcttgctcttgcatgt |
219 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
1815083 |
ggctctctaatttctgatacaaatttcccccattttcttttcctaactcctatataggatgttggaggagtaacatttgcatgttcttgctcttgcatgt |
1815182 |
T |
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| Q |
220 |
tgtttgattcttccattgtaaaataatctaattggacaaaac |
261 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |
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| T |
1815183 |
tgtttgattcttccattgtaaaataatctaattggacaaaac |
1815224 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 28 - 171
Target Start/End: Original strand, 1794955 - 1795098
Alignment:
| Q |
28 |
gtcctttgagatgaaaagctgctatatcatacgctgctgctgccatttgtggttcttcatagctccctaaccatattctgctcttcttacctggctctct |
127 |
Q |
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|||||||||| | |||||||||||||||||| ||| ||||||||||||||||||||||||| ||||||||||||||||||| ||||| || | | || |
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| T |
1794955 |
gtcctttgaggtaaaaagctgctatatcatatgctattgctgccatttgtggttcttcatagttccctaaccatattctgcttttcttctcttgaaccct |
1795054 |
T |
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| Q |
128 |
aatttctgatacaaatttcccccattttcttttcctaactccta |
171 |
Q |
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| T |
1795055 |
tatttctgatgcaaatttcccccattttctcttcctaactccta |
1795098 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 28 - 237
Target Start/End: Original strand, 1812367 - 1812585
Alignment:
| Q |
28 |
gtcctttgagatgaaaagctgctatatcatacgctgctgctgccatttgtggttcttcatagctccctaaccatattctgctcttcttacctggctctct |
127 |
Q |
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|||||||||| |||||||||||||||||| | || | ||||||||||||||||||||||||| | ||||||||||||||| | ||| | ||| | || || |
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| T |
1812367 |
gtcctttgaggtgaaaagctgctatatcacatgcagttgctgccatttgtggttcttcataggtacctaaccatattctgatgttcctcccttgatccct |
1812466 |
T |
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| Q |
128 |
aatttctgatacaaatttcccccattttcttttcctaactcctatatagga---------tgttggaggagtaatatttgcatgttcttgctcttgcatg |
218 |
Q |
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|||| |||| ||||||||||||||||||| ||||||||||| |||| ||| ||||||||||| || ||| ||||||| ||||||||||| |
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| T |
1812467 |
tatttttgatgcaaatttcccccattttctcttcctaactcccatattggatgatgctggtgttggaggaggaacattcacatgttcatgctcttgcatt |
1812566 |
T |
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| Q |
219 |
ttgtttgattcttccattg |
237 |
Q |
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| T |
1812567 |
atgtttgattcttccattg |
1812585 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 180 - 231
Target Start/End: Original strand, 1796002 - 1796053
Alignment:
| Q |
180 |
gttggaggagtaatatttgcatgttcttgctcttgcatgttgtttgattctt |
231 |
Q |
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|||||||||| || ||| |||||||||||||||||||| |||||||||||| |
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| T |
1796002 |
gttggaggaggaacattcacatgttcttgctcttgcatgatgtttgattctt |
1796053 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 28 - 180
Target Start/End: Complemental strand, 14489018 - 14488864
Alignment:
| Q |
28 |
gtcctttgagatgaaaagctgctatatcatacgctgctgctgc---catttgtggttcttcatagctccctaaccatattctgctcttcttacctggctc |
124 |
Q |
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||||||| || |||||||||||||||||||| ||||||||||| || |||||||||||||||||| | |||||||||| |||| ||||| ||| | || |
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| T |
14489018 |
gtcctttaaggtgaaaagctgctatatcatatgctgctgctgctgccacttgtggttcttcatagcttc-taaccatattttgcttttcttcccttgatc |
14488920 |
T |
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| Q |
125 |
tctaatttctgatacaaatttcccccattttcttttcctaactcctatataggatg |
180 |
Q |
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| ||||||||| ||||||||||||||||| |||||||||||||||||||||| |
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| T |
14488919 |
ctttatttctgatggaaatttcccccattttcccttcctaactcctatataggatg |
14488864 |
T |
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