View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6335_high_13 (Length: 214)
Name: NF6335_high_13
Description: NF6335
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6335_high_13 |
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Alignment Details
Target: chr5 (Bit Score: 178; Significance: 3e-96; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 178; E-Value: 3e-96
Query Start/End: Original strand, 11 - 196
Target Start/End: Original strand, 33316429 - 33316614
Alignment:
| Q |
11 |
atcatcatatcattcacccacaagcataaaatattttgcttcctccttgtttcgtttcatgctagtattctagtacaacctatttcctctccctttcaaa |
110 |
Q |
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| T |
33316429 |
atcatcctatcattcacccacaagcacaaaatattttgcttcctccttgtttcgtttcatgctagtattctagtacaacctatttcctctccctttcaaa |
33316528 |
T |
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| Q |
111 |
atattctccttgcaggccaaaaatacaataaaacaaaaccatgacaactatggtatctcaagaaagcgttgttgcatcggtttctc |
196 |
Q |
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| T |
33316529 |
atattctccttgcaggccaaaaatacaataaaacaaaaccatgacaactatggtatctcaagaaagcgttgttgcatcggtttctc |
33316614 |
T |
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