View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6335_high_3 (Length: 405)
Name: NF6335_high_3
Description: NF6335
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6335_high_3 |
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Alignment Details
Target: chr8 (Bit Score: 163; Significance: 6e-87; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 163; E-Value: 6e-87
Query Start/End: Original strand, 159 - 387
Target Start/End: Original strand, 33116098 - 33116313
Alignment:
| Q |
159 |
actgtcagctacaaatcatattgacttgactttatcccatgcatggcacttctttcgaagttgcaaccaacagcaatctttgacattcaccacttccact |
258 |
Q |
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| T |
33116098 |
actgtccgctacaaatcatattgacttgactttatcccatg----gcacttctttctaagttgcaaccaaca---atctttgacattcaccacttccact |
33116190 |
T |
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| Q |
259 |
cattacatacgtgcaactgcaagtgtgcaatgtgtgagtctaaatatctagggcagccctattttctagaggatgcttgtgaaaataaatttgattctat |
358 |
Q |
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| T |
33116191 |
cattacatacgtgca------agtgtgcaatgtgtgagtctaaatatctagggcagccctattttttagaggatgcttgtgaaaataaatttgattctat |
33116284 |
T |
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| Q |
359 |
catcctccttatcttattcatttagcatg |
387 |
Q |
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| T |
33116285 |
catcctccttatcttattcatttagcatg |
33116313 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 33115803 - 33115867
Alignment:
| Q |
1 |
taaattatactgcaatactaaatatggactaaattagtacttctgatttatcataattttctgtg |
65 |
Q |
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| T |
33115803 |
taaattatactgcaatactaaatatggactaaattaatacttctgatttatcatagttttctgtg |
33115867 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 76 - 125
Target Start/End: Original strand, 33115984 - 33116033
Alignment:
| Q |
76 |
ttctctctattgttttgattttcttatcaatagttattccaaaagttatc |
125 |
Q |
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| T |
33115984 |
ttctctccattgttttgattttcttattaatatttattccaaaagttatc |
33116033 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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