View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6335_high_5 (Length: 399)
Name: NF6335_high_5
Description: NF6335
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6335_high_5 |
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Alignment Details
Target: chr6 (Bit Score: 329; Significance: 0; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 12 - 380
Target Start/End: Complemental strand, 15521402 - 15521034
Alignment:
| Q |
12 |
tcatcactttttccgtgtatatactttattatcaaaattttctgatttcaatttcgtacatatgttcttttttaggcgttggttcagctgtgttaggatc |
111 |
Q |
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| T |
15521402 |
tcataactttttccgtgtatatactttattatcaaaattttctgatttcaatttcgtacatatgttcttttttaggcgttgcttcaggtgtgttaggatc |
15521303 |
T |
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| Q |
112 |
atttgtagtgatcagtgccatatatttctataagcgccgaaagactaaatcatacttaaagtctcacagcctcccttatgtttcatcttcaagggatctt |
211 |
Q |
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| T |
15521302 |
atttgtagtgatcagtgccatatatttctatcagcgccgaaagactaaatcatacttaaagtctcacagcctcccttatgtttcgtcttcaacggatctt |
15521203 |
T |
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| Q |
212 |
gagaggggaagtcaacactttggggtgcaacttttcacttatagtgagcttgaagaagccacaaaccactttgatccatcgaatggactgggaaaagggg |
311 |
Q |
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| T |
15521202 |
gagtggggaagtcaacactttggggtgcaactttttacttatagtgagcttgaagaagccacaaaccactttgatccatcgaatggactgggaaaagggg |
15521103 |
T |
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| Q |
312 |
gctttggaacagtatattttggtaaaaactatcatatttttcatagttgaaatggattccttttagtta |
380 |
Q |
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| T |
15521102 |
gctttggaacagtgtattttggtaaaaactatcatatttttcataattgaaatggattccttttagtta |
15521034 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 206 - 376
Target Start/End: Original strand, 15494971 - 15495140
Alignment:
| Q |
206 |
gatcttgagaggggaagtcaacactttggggtgcaacttttcacttatagtgagcttgaagaagccacaaaccactttgatccatcgaatggactgggaa |
305 |
Q |
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| T |
15494971 |
gatctcgagaggggaagtcaaaacattggagtgcaacatttcacttatagtgagcttgaagaagccacaaactactttgatccatccaaaggattaggaa |
15495070 |
T |
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| Q |
306 |
aagggggctttggaacagtatattttggtaaaaactatcatatttttcatagttgaaatggattcctttta |
376 |
Q |
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| T |
15495071 |
aagggggctttggaacagtctatttcggtaaaaactagcata-ttcgcatatttgaaatggattcctttta |
15495140 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 218 - 336
Target Start/End: Original strand, 31016971 - 31017089
Alignment:
| Q |
218 |
ggaagtcaacactttggggtgcaacttttcacttatagtgagcttgaagaagccacaaaccactttgatccatcgaatggactgggaaaagggggctttg |
317 |
Q |
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| T |
31016971 |
ggaagccaaaactttggagtgcaagcttttacttatagtgagcttcaagaagccacaaacaactttgatccgtctaaagaactcggagaagggggctttg |
31017070 |
T |
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| Q |
318 |
gaacagtatattttggtaa |
336 |
Q |
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| T |
31017071 |
ggacagtgtattttggtaa |
31017089 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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