View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6335_high_6 (Length: 378)
Name: NF6335_high_6
Description: NF6335
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6335_high_6 |
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Alignment Details
Target: chr4 (Bit Score: 347; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 18 - 368
Target Start/End: Complemental strand, 55956457 - 55956107
Alignment:
| Q |
18 |
gacctcttatgcatcttcagcttggtgaaatttctgcagtggttgtttcatctcctgatttggccaaagagataatgaagacacatgatctttcttttgt |
117 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55956457 |
gacctcttatgtatcttcagcttggtgaaatttctgcagtggttgtttcatctcctgatttggccaaagagataatgaagacacatgatctttcttttgt |
55956358 |
T |
|
| Q |
118 |
tcagaggccagaactcctagctcctaaaatattatcatatgattcaacagatattgtttatgctccatacggtgattattggagacagatgaggaaaata |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
55956357 |
tcagaggccagaactcctagctcctaaaatattatcatatgattcaacagatattgtttatgctccatacggtgattattggagacagatgaggaaaata |
55956258 |
T |
|
| Q |
218 |
tgtacatcacagcttcttagtgctaaaagggttcattatttttcttccattagagaagaagaggtgcaaaagctcatacaatcaattcaagtttcacttt |
317 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55956257 |
tgtacatcacagcttcttagtgctaaaagggttcattatttttcttccattagagaagaagaggtgcaaaagctcatacaatcaattcaagtttcacttt |
55956158 |
T |
|
| Q |
318 |
cactaccacttaatgttactaaaacagctttttctttggtaagtacctttg |
368 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
55956157 |
cactaccacttaatgttactaaaacagctttttctttggtaagtacctttg |
55956107 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 18 - 368
Target Start/End: Complemental strand, 55959906 - 55959551
Alignment:
| Q |
18 |
gacctcttatgcatcttcagcttggtgaaatttctgcagtggttgtttcatctcctgatttggccaaagagataatgaagacacatgatctttcttttgt |
117 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||| || | ||||| ||||| |||||||| |||||||||||| ||||||||| ||||||| ||||||| |
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|
| T |
55959906 |
gacctcttatgcatcttcagctaggtgaaatttctacaatagttgtctcatcccctgatttagccaaagagatattgaagacacgtgatcttgcttttgt |
55959807 |
T |
|
| Q |
118 |
tcagaggccagaactcctagctcctaaaatattatcatatgattcaacagatattgtttatgctccatacggtgattattggagacagatgaggaaaata |
217 |
Q |
| |
|
||| |||||| ||||| | |||||||| |||||| | ||||||||||| | |||||| | ||||||||||||||||||||||||||| |||||||||||| |
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|
| T |
55959806 |
tcaaaggccaaaactcattgctcctaatatattagcctatgattcaactggtattgtctttgctccatacggtgattattggagacaaatgaggaaaata |
55959707 |
T |
|
| Q |
218 |
tgtacatcacagcttc-----ttagtgctaaaagggttcattatttttcttccattagagaagaagaggtgcaaaagctcatacaatcaattcaagtttc |
312 |
Q |
| |
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||||||||| | |||| ||||||||||||||||||| | ||||||||||||||||||||| ||||| ||||||| |||||||| ||||||| ||| |
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|
| T |
55959706 |
tgtacatcagaacttcttatattagtgctaaaagggttcaatctttttcttccattagagaagatgaggtagaaaagcttatacaatccattcaaggttc |
55959607 |
T |
|
| Q |
313 |
actttcactaccacttaatgttactaaaacagctttttctttggtaagtacctttg |
368 |
Q |
| |
|
|||||||||||||||| |||||||||||| |||||| ||||||||||||||||||| |
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|
| T |
55959606 |
actttcactaccacttgatgttactaaaatagctttctctttggtaagtacctttg |
55959551 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 170; Significance: 4e-91; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 170; E-Value: 4e-91
Query Start/End: Original strand, 18 - 299
Target Start/End: Complemental strand, 12426787 - 12426506
Alignment:
| Q |
18 |
gacctcttatgcatcttcagcttggtgaaatttctgcagtggttgtttcatctcctgatttggccaaagagataatgaagacacatgatctttcttttgt |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||| ||| ||||| | ||||||||||||||||||||||||||||||||||| |
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|
| T |
12426787 |
gacctcttatgcatcttcagcttggtgaaatttctacagtggttgtttcatcccctaatttgactaaagagataatgaagacacatgatctttcttttgt |
12426688 |
T |
|
| Q |
118 |
tcagaggccagaactcctagctcctaaaatattatcatatgattcaacagatattgtttatgctccatacggtgattattggagacagatgaggaaaata |
217 |
Q |
| |
|
|||||||||| || |||||||||| || |||||| ||||||| |||| ||||||| | | |||| |||| ||||||||||||||||||||||| |||||| |
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|
| T |
12426687 |
tcagaggccacaattcctagctccaaatatattaacatatgaatcaaaagatattatctttgcttcatatggtgattattggagacagatgagaaaaata |
12426588 |
T |
|
| Q |
218 |
tgtacatcacagcttcttagtgctaaaagggttcattatttttcttccattagagaagaagaggtgcaaaagctcatacaat |
299 |
Q |
| |
|
||||||||| | |||||||||||||||||||| || | ||||||||||||||||||||| | |||| ||||| | ||||||| |
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|
| T |
12426587 |
tgtacatcagaacttcttagtgctaaaagggtccaatctttttcttccattagagaagatggggtggaaaagatgatacaat |
12426506 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 131; E-Value: 7e-68
Query Start/End: Original strand, 18 - 299
Target Start/End: Original strand, 12266033 - 12266314
Alignment:
| Q |
18 |
gacctcttatgcatcttcagcttggtgaaatttctgcagtggttgtttcatctcctgatttggccaaagagataatgaagacacatgatctttcttttgt |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||| ||| ||||| ||||||| ||||||| |||||||||||||||||| || |
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| T |
12266033 |
gacctcttatgcatcttcagcttggtgaaatttctgccgtggttgtttcatcccctaatttgaccaaagaaataatgaggacacatgatctttctttcgt |
12266132 |
T |
|
| Q |
118 |
tcagaggccagaactcctagctcctaaaatattatcatatgattcaacagatattgtttatg-ctccatacggtgattattggagacagatgaggaaaat |
216 |
Q |
| |
|
| |||||||| | |||| ||||| || ||| || | ||||| |||| ||||||| | ||| || |||| ||||||||||||||||||||||| ||||| |
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|
| T |
12266133 |
tgagaggccacgattccttgctccgaatataataacctatgaatcaaaagatatt-ctcatgtcttcatatggtgattattggagacagatgagaaaaat |
12266231 |
T |
|
| Q |
217 |
atgtacatcacagcttcttagtgctaaaagggttcattatttttcttccattagagaagaagaggtgcaaaagctcatacaat |
299 |
Q |
| |
|
|||||||||| | |||||||||||||||||||| || | ||||||||||||||||||||| | |||| ||||| | ||||||| |
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|
| T |
12266232 |
atgtacatcagaacttcttagtgctaaaagggtccaatctttttcttccattagagaagatggggtggaaaagatgatacaat |
12266314 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 48; Significance: 2e-18; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 41 - 276
Target Start/End: Original strand, 7140518 - 7140753
Alignment:
| Q |
41 |
ggtgaaatttctgcagtggttgtttcatctcctgatttggccaaagagataatgaagacacatgatctttcttttgttcagaggccagaactcctagctc |
140 |
Q |
| |
|
||||||||| ||||||||||||||| || | |||| ||||| || ||||||| ||||||||| || ||||| | | |||||| |||| | ||| |
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|
| T |
7140518 |
ggtgaaattaatgcagtggttgtttcttcctcaaatttagccaaggaagtaatgaaaacacatgatgttgtttttgctaataggccaaaacttccttctc |
7140617 |
T |
|
| Q |
141 |
ctaaaatattatcatatgattcaacagatattgtttatgctccatacggtgattattggagacagatgaggaaaatatgtacatcacagcttcttagtgc |
240 |
Q |
| |
|
|||||| ||| | |||| || | ||||||||| | | ||||||| ||||||||||||||||| ||||| ||||||||| | | || |||| ||||| |
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|
| T |
7140618 |
ttaaaattttagcctatggttttaaagatattgtattttctccatatggtgattattggagacaaatgagaaaaatatgtgtcttagagattctaagtgc |
7140717 |
T |
|
| Q |
241 |
taaaagggttcattatttttcttccattagagaaga |
276 |
Q |
| |
|
|||||||||||| | |||||||| |||||||||||| |
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|
| T |
7140718 |
taaaagggttcaatctttttcttacattagagaaga |
7140753 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 38 - 276
Target Start/End: Original strand, 7152346 - 7152584
Alignment:
| Q |
38 |
cttggtgaaatttctgcagtggttgtttcatctcctgatttggccaaagagataatgaagacacatgatctttcttttgttcagaggccagaactcctag |
137 |
Q |
| |
|
||||||||||||||| | ||| |||| ||||||||| | ||||| || || |||||||| ||||||||| | |||||| | | |||||| |||| || |
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|
| T |
7152346 |
cttggtgaaatttctactgtgattgtatcatctcctaaattggcaaaggaaataatgaaaacacatgatgctgcttttgctaataggccaaaacttcttt |
7152445 |
T |
|
| Q |
138 |
ctcctaaaatattatcatatgattcaacagatattgtttatgctccatacggtgattattggagacagatgaggaaaatatgtacatcacagcttcttag |
237 |
Q |
| |
|
| ||| |||| | | |||| ||||| ||||||||| | | ||||||| ||||||| ||||||||| ||||| ||||||||| | | ||||| || |
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|
| T |
7152446 |
cccctgaaattatggcctatggttcaaaagatattgtattttctccatatggtgatttttggagacaaatgagaaaaatatgtgtctttgaacttctaag |
7152545 |
T |
|
| Q |
238 |
tgctaaaagggttcattatttttcttccattagagaaga |
276 |
Q |
| |
|
||||||||||||||| | |||||||| ||||||||||| |
|
|
| T |
7152546 |
tgctaaaagggttcaatctttttcttatattagagaaga |
7152584 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 155 - 221
Target Start/End: Original strand, 7130269 - 7130335
Alignment:
| Q |
155 |
tatgattcaacagatattgtttatgctccatacggtgattattggagacagatgaggaaaatatgta |
221 |
Q |
| |
|
|||| ||||| |||||||| | | ||||||| ||||||||||||||||| ||||| |||||||||| |
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|
| T |
7130269 |
tatggttcaaaagatattgcattttctccatatggtgattattggagacaaatgagaaaaatatgta |
7130335 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 59 - 108
Target Start/End: Complemental strand, 22858506 - 22858457
Alignment:
| Q |
59 |
gttgtttcatctcctgatttggccaaagagataatgaagacacatgatct |
108 |
Q |
| |
|
||||||||||||| ||| |||| |||||||||||||| ||||||||||| |
|
|
| T |
22858506 |
gttgtttcatctcaagatatggcaaaagagataatgaaaacacatgatct |
22858457 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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