View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6335_low_10 (Length: 246)
Name: NF6335_low_10
Description: NF6335
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6335_low_10 |
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Alignment Details
Target: chr2 (Bit Score: 164; Significance: 9e-88; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 164; E-Value: 9e-88
Query Start/End: Original strand, 18 - 230
Target Start/End: Complemental strand, 10045841 - 10045629
Alignment:
| Q |
18 |
gcaaacattcataaaaatactaaagtattctcacaagaaagannnnnnnaccatattcattgaattaccgatatatctaatatatcaaaaaacatcagtt |
117 |
Q |
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| T |
10045841 |
gcaaacattcataaaaataccaaagtattctcacaagaaagaattttttaccatattcattgaattaccgatatatctaatatatcaaaaaacatcagtt |
10045742 |
T |
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| Q |
118 |
atttaataaacataacaaatatccaactttaaagtgagcaactattccgttttctttaaataattgtgaaatttaaacctttttcgttgggataatggag |
217 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||| || |||||||||||||| |||||||||||||||||| ||||||| ||||||||| |
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| T |
10045741 |
atttaataaacaaaacaaatatccaactttaaagtgagcaactataccattttctttaaataaatgtgaaatttaaacctttctcgttggaataatggag |
10045642 |
T |
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| Q |
218 |
gagtagataattg |
230 |
Q |
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||||||||||||| |
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| T |
10045641 |
gagtagataattg |
10045629 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 159; E-Value: 9e-85
Query Start/End: Original strand, 15 - 230
Target Start/End: Complemental strand, 10111623 - 10111408
Alignment:
| Q |
15 |
actgcaaacattcataaaaatactaaagtattctcacaagaaagannnnnnnaccatattcattgaattaccgatatatctaatatatcaaaaaacatca |
114 |
Q |
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||||||||||||||||||||||| ||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
10111623 |
actgcaaacattcataaaaataccaaaatattctcacaagaaagatttttttaccatattcattgaattaccgatatatctaatatatcaaaaaacataa |
10111524 |
T |
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| Q |
115 |
gttatttaataaacataacaaatatccaactttaaagtgagcaactattccgttttctttaaataattgtgaaatttaaacctttttcgttgggataatg |
214 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||| || |||||||||||||| |||||||||||||||||| ||||||| |||||| |
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| T |
10111523 |
gttatttaataaacaaaacaaatatccaactttaaagtgagcaactataccattttctttaaataaatgtgaaatttaaacctttctcgttggaataatg |
10111424 |
T |
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| Q |
215 |
gaggagtagataattg |
230 |
Q |
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|||||||||||||||| |
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| T |
10111423 |
gaggagtagataattg |
10111408 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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