View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6335_low_2 (Length: 433)
Name: NF6335_low_2
Description: NF6335
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6335_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 165; Significance: 4e-88; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 165; E-Value: 4e-88
Query Start/End: Original strand, 171 - 346
Target Start/End: Complemental strand, 8176983 - 8176807
Alignment:
| Q |
171 |
ggacagatgaaattccctctgttgtttagttagtattt-agttgtatttggtgttataggaatatcagttttaagttttaaaataaattgcacctcttta |
269 |
Q |
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| T |
8176983 |
ggacagatgaaattccctctgttgtttagttagtattttagttgtatttggtgttataggaatatcagttttaagttttaaaataaattgcacctcttta |
8176884 |
T |
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| Q |
270 |
taaatgagagagatcatttgattttcttttcaattctagcgagtttgtcttcacacttatgagttgttgagtaatct |
346 |
Q |
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| T |
8176883 |
taaatgagagagatcattcgattttcttttcaattctagcgagtttgtcttcacacttatgagttgttgagtaatct |
8176807 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 1 - 119
Target Start/End: Complemental strand, 8177153 - 8177035
Alignment:
| Q |
1 |
agtgttccatgagttcccagatttgagaaggttgcaagcttatactgttctacagaacatagcttctcaaagggtgttggaaaaggtagggttccataaa |
100 |
Q |
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| T |
8177153 |
agtgttccatgagttcccagatttgagaaggttgcaagcttatactgttctacagaacatagcttctcagagggtgttggaaaaggtagggttccataaa |
8177054 |
T |
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| Q |
101 |
gagggtatgctcagaaagg |
119 |
Q |
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| T |
8177053 |
gagggtatgctcagaaagg |
8177035 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 347 - 416
Target Start/End: Complemental strand, 8176701 - 8176632
Alignment:
| Q |
347 |
tagagttagcactaagacgctcaagttaataaaatgaggaaggaaagtgtgcgaaaagtggtgaaaatgt |
416 |
Q |
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| T |
8176701 |
tagagttagcattaagatgctcaagttaatgaaatgaggaaggaaagtgtgcgaaaagtggtgaaaatgt |
8176632 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 378 - 415
Target Start/End: Original strand, 45046467 - 45046504
Alignment:
| Q |
378 |
aaatgaggaaggaaagtgtgcgaaaagtggtgaaaatg |
415 |
Q |
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| T |
45046467 |
aaatgaggaaggaaaatgtgcgaaaagtgatgaaaatg |
45046504 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 61 - 118
Target Start/End: Complemental strand, 25503336 - 25503279
Alignment:
| Q |
61 |
agcttctcaaagggtgttggaaaaggtagggttccataaagagggtatgctcagaaag |
118 |
Q |
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| T |
25503336 |
agcttctcagagggtcttggaaaaggttgggttccttagggagggtatactcagaaag |
25503279 |
T |
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