View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6335_low_4 (Length: 405)
Name: NF6335_low_4
Description: NF6335
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6335_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 348; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 7 - 390
Target Start/End: Complemental strand, 46622546 - 46622163
Alignment:
| Q |
7 |
tccaagaatatttaattttctgcaatttttatttctttatcaagttgcggtttagtttgaattggtttgaacacaaacgcaaataagatatgtatgcata |
106 |
Q |
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| T |
46622546 |
tccaacaatatttaattttctgcagtttttatttctttatcaagttgcagtttagtttgaattggtttgaacatgaacgcaaataaaatatgtatgcata |
46622447 |
T |
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| Q |
107 |
tcaaatacattttcttaaggatcaaatacattttaaagctgtaagattttgaaaatgatttaatttaaaaatattagttttaattgtgatatataaacaa |
206 |
Q |
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| T |
46622446 |
tcaaatacattttcttaaggatcaaatacattttaaagctgtaagattttgaaaatgatttaatttaaaaatattagttttaattgtgatatataaacaa |
46622347 |
T |
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| Q |
207 |
aaatgacactgtagctatattggttgagaaaaacttgagtgttcatcaaacaaattacaatggaattaattcaagattaggaaaatatatgacagtaaac |
306 |
Q |
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| T |
46622346 |
aaatgacactgtagctatattggttgagaaaaacttgagtgttcatcaaacaaattacaatggaattaattcaagattaggaaaatatatgacagtaaac |
46622247 |
T |
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| Q |
307 |
caccttttagtaccttaagagattaaggtttaaactttcattgtatttagaaaaagacactaaacaattcttatgcttgttttt |
390 |
Q |
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| T |
46622246 |
caccttttagtaccttaagagattgaggtttaaactttcattgtatttagaaaatggcactaaacaattcttatgcttgttttt |
46622163 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 329 - 390
Target Start/End: Complemental strand, 46627919 - 46627858
Alignment:
| Q |
329 |
ttaaggtttaaactttcattgtatttagaaaaagacactaaacaattcttatgcttgttttt |
390 |
Q |
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| T |
46627919 |
ttaaggcttaaactttcattgtatttagaaaatgacactaaacaattcttgtgcttgttttt |
46627858 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 142; Significance: 2e-74; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 86 - 390
Target Start/End: Original strand, 37146701 - 37146998
Alignment:
| Q |
86 |
caaataagatatgtatgcatatcaaatacattttcttaaggatcaaatacatttt-aaagctgtaagattttgaaaatgatttaatttaaaaatattagt |
184 |
Q |
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| T |
37146701 |
caaataagatatgtatgcatatcaagtagatttttttaaggatcacatacatttttaaaactgtaagattttgaaaattatttaatttataaatattagt |
37146800 |
T |
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| Q |
185 |
tttaattgtgatatataaacaaaaatgacactgtagctatattggttgagaaaaactt-gagtgttcatcaaacaaattacaatggaattaattcaagat |
283 |
Q |
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| T |
37146801 |
tttaattgtggtatgtaaacaaaaatgacattgcagctatattggttgaaaaaaaattcgagtgttcattgaccaaattacaatggatttaattcaaaat |
37146900 |
T |
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| Q |
284 |
taggaaaatatatgacagtaaaccaccttttagtaccttaagagattaaggtttaaactttcattgtatttagaaaaagacactaaacaattcttatgct |
383 |
Q |
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| T |
37146901 |
taagaaaatatatgacag-aaaccatcttttagtgc--------tttaaggcttaatctgtcattgtatttagaaaatgacaataaacaattcgtatgct |
37146991 |
T |
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