View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6335_low_8 (Length: 293)

Name: NF6335_low_8
Description: NF6335
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6335_low_8
NF6335_low_8
[»] chr5 (3 HSPs)
chr5 (59-275)||(34708564-34708782)
chr5 (171-258)||(36580996-36581083)
chr5 (62-107)||(5406628-5406673)
[»] chr7 (1 HSPs)
chr7 (149-258)||(5060927-5061036)
[»] chr4 (1 HSPs)
chr4 (170-258)||(37576641-37576729)
[»] chr1 (2 HSPs)
chr1 (175-258)||(27039342-27039425)
chr1 (178-275)||(42883151-42883248)
[»] chr3 (4 HSPs)
chr3 (174-244)||(33148918-33148987)
chr3 (149-218)||(26997833-26997902)
chr3 (197-238)||(4969993-4970034)
chr3 (179-223)||(26998205-26998248)
[»] chr6 (2 HSPs)
chr6 (160-215)||(1826184-1826239)
chr6 (232-269)||(11182055-11182092)
[»] chr8 (1 HSPs)
chr8 (197-239)||(43996005-43996047)
[»] chr2 (1 HSPs)
chr2 (178-223)||(2831430-2831474)


Alignment Details
Target: chr5 (Bit Score: 200; Significance: 1e-109; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 59 - 275
Target Start/End: Original strand, 34708564 - 34708782
Alignment:
Q  59 taacagaagacattgattgcaagactgaatcatgtaagaaaattaaggg--tcaaattgttaatctaattgtgccgcttaatgcaatatcactgtcttat 156  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||    
T  34708564 taacagaagacattgattgcaagactgaatcatgtaagaaaattaagggattcaaattgttaatctaattgtgccgcttaatgcaatatcactgtcttat 34708663  T
Q  157 agttgttgcccagtagccatgaaaaccaacgtgagttaattcacgttgggatttcaatgtgatttttgcagatttataactagtgtgagtaaactcacgc 256  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||    
T  34708664 agttgttgcccagtagccatgaaaaccaacgtgagttaattcacgttgggatttcaatgtgatttttgcagatttataactagtgtgagttaactcatgc 34708763  T
Q  257 agggataatatggacattt 275  Q
    |||||||||||||||||||    
T  34708764 agggataatatggacattt 34708782  T

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Target: chr5; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 171 - 258
Target Start/End: Original strand, 36580996 - 36581083
Alignment:
Q  171 agccatgaaaaccaacgtgagttaattcacgttgggatttcaatgtgatttttgcagatttataactagtgtgagtaaactcacgcag 258  Q
    |||||||||||| || |||||||||||||||||||||||||||||| ||||||||| | |||||||||| |||||| || ||||||||    
T  36580996 agccatgaaaactaaggtgagttaattcacgttgggatttcaatgtcatttttgcataattataactagcgtgagttaattcacgcag 36581083  T

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Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 62 - 107
Target Start/End: Complemental strand, 5406673 - 5406628
Alignment:
Q  62 cagaagacattgattgcaagactgaatcatgtaagaaaattaaggg 107  Q
    ||||||||| |||||||||||||||||||||||| |||||||||||    
T  5406673 cagaagacagtgattgcaagactgaatcatgtaaaaaaattaaggg 5406628  T

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Target: chr7 (Bit Score: 62; Significance: 8e-27; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 149 - 258
Target Start/End: Complemental strand, 5061036 - 5060927
Alignment:
Q  149 tgtcttatagttgttgcccagtagccatgaaaaccaacgtgagttaattcacgttgggatttcaatgtgatttttgcagatttataactagtgtgagtaa 248  Q
    ||||||||| |||||| ||| |  | ||||||| ||||||||||||| |||| |||| |||||||||||||||||||||| ||||||||||||||||| |    
T  5061036 tgtcttatatttgttgtccactgactatgaaaatcaacgtgagttaactcacattggaatttcaatgtgatttttgcagaattataactagtgtgagtta 5060937  T
Q  249 actcacgcag 258  Q
    ||||||||||    
T  5060936 actcacgcag 5060927  T

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Target: chr4 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 170 - 258
Target Start/End: Complemental strand, 37576729 - 37576641
Alignment:
Q  170 tagccatgaaaaccaacgtgagttaattcacgttgggatttcaatgtgatttttgcagatttataactagtgtgagtaaactcacgcag 258  Q
    ||||||||||||||||| |||||||| |||||||| ||||||||||| ||||||||| | |||||||||| ||| || |||||||||||    
T  37576729 tagccatgaaaaccaacatgagttaactcacgttgagatttcaatgtcatttttgcataattataactagcgtgtgttaactcacgcag 37576641  T

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Target: chr1 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 175 - 258
Target Start/End: Complemental strand, 27039425 - 27039342
Alignment:
Q  175 atgaaaaccaacgtgagttaattcacgttgggatttcaatgtgatttttgcagatttataactagtgtgagtaaactcacgcag 258  Q
    ||||||||||||||||||||| |||||||||||||||||||| |||||||  || |||||| | | |||||| |||||||||||    
T  27039425 atgaaaaccaacgtgagttaactcacgttgggatttcaatgtaatttttgttgaattataatttgcgtgagttaactcacgcag 27039342  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 178 - 275
Target Start/End: Complemental strand, 42883248 - 42883151
Alignment:
Q  178 aaaaccaacgtgagttaattcacgttgggatttcaatgtgatttttgcagatt-tataactagtgtgagtaaactcacgcagggataatatggacattt 275  Q
    |||| ||||||||||||| | ||||||||||| |||| |||||||| || |   ||||||||| |||||| |||||||||||||| |||||| ||||||    
T  42883248 aaaatcaacgtgagttaacttacgttgggatt-caatatgattttttcaaaaaatataactagcgtgagttaactcacgcagggacaatatgaacattt 42883151  T

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Target: chr3 (Bit Score: 47; Significance: 7e-18; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 174 - 244
Target Start/End: Complemental strand, 33148987 - 33148918
Alignment:
Q  174 catgaaaaccaacgtgagttaattcacgttgggatttcaatgtgatttttgcagatttataactagtgtga 244  Q
    |||||||||||||||||||||| ||||||||| |||||||||| ||||||||||| |||||||||| ||||    
T  33148987 catgaaaaccaacgtgagttaactcacgttgg-atttcaatgtcatttttgcagaattataactagcgtga 33148918  T

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Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 149 - 218
Target Start/End: Complemental strand, 26997902 - 26997833
Alignment:
Q  149 tgtcttatagttgttgcccagtagccatgaaaaccaacgtgagttaattcacgttgggatttcaatgtga 218  Q
    ||||||||| || ||||| | |||||||||||||||| ||||||||| ||||||||| ||||||||||||    
T  26997902 tgtcttatatttattgcctactagccatgaaaaccaatgtgagttaactcacgttggaatttcaatgtga 26997833  T

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Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 197 - 238
Target Start/End: Complemental strand, 4970034 - 4969993
Alignment:
Q  197 tcacgttgggatttcaatgtgatttttgcagatttataacta 238  Q
    |||||||||||||| ||||||||||||||||| |||||||||    
T  4970034 tcacgttgggattttaatgtgatttttgcagaattataacta 4969993  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 179 - 223
Target Start/End: Original strand, 26998205 - 26998248
Alignment:
Q  179 aaaccaacgtgagttaattcacgttgggatttcaatgtgattttt 223  Q
    ||||||||||||||||| ||||||||| | |||||||||||||||    
T  26998205 aaaccaacgtgagttaactcacgttggta-ttcaatgtgattttt 26998248  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 160 - 215
Target Start/End: Complemental strand, 1826239 - 1826184
Alignment:
Q  160 tgttgcccagtagccatgaaaaccaacgtgagttaattcacgttgggatttcaatg 215  Q
    |||||| || || ||||||||||||||||||||||| |||||||||||||| ||||    
T  1826239 tgttgctcactacccatgaaaaccaacgtgagttaactcacgttgggatttaaatg 1826184  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 232 - 269
Target Start/End: Original strand, 11182055 - 11182092
Alignment:
Q  232 ataactagtgtgagtaaactcacgcagggataatatgg 269  Q
    ||||||||||||||| ||||||| ||||||||||||||    
T  11182055 ataactagtgtgagttaactcactcagggataatatgg 11182092  T

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Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 197 - 239
Target Start/End: Complemental strand, 43996047 - 43996005
Alignment:
Q  197 tcacgttgggatttcaatgtgatttttgcagatttataactag 239  Q
    |||||||| ||||||||||||||||||||||| ||||||||||    
T  43996047 tcacgttgagatttcaatgtgatttttgcagaattataactag 43996005  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 178 - 223
Target Start/End: Original strand, 2831430 - 2831474
Alignment:
Q  178 aaaaccaacgtgagttaattcacgttgggatttcaatgtgattttt 223  Q
    |||| ||||||||||||| ||||||||||| |||||||||||||||    
T  2831430 aaaatcaacgtgagttaactcacgttggga-ttcaatgtgattttt 2831474  T

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