View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6336_high_1 (Length: 1130)

Name: NF6336_high_1
Description: NF6336
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6336_high_1
NF6336_high_1
[»] chr4 (9 HSPs)
chr4 (145-781)||(36087414-36088070)
chr4 (20-121)||(36087294-36087395)
chr4 (652-686)||(313657-313691)
chr4 (652-686)||(1638517-1638551)
chr4 (652-686)||(22128345-22128379)
chr4 (652-686)||(34557253-34557287)
chr4 (653-686)||(6553875-6553908)
chr4 (653-686)||(32175770-32175803)
chr4 (653-686)||(46286262-46286295)
[»] chr5 (8 HSPs)
chr5 (31-100)||(36855236-36855305)
chr5 (18-86)||(10240708-10240776)
chr5 (19-101)||(5069100-5069182)
chr5 (656-686)||(10420285-10420315)
chr5 (652-686)||(16121872-16121906)
chr5 (652-686)||(20187974-20188008)
chr5 (652-686)||(23974609-23974643)
chr5 (653-686)||(13620160-13620193)
[»] chr1 (11 HSPs)
chr1 (27-121)||(22572076-22572170)
chr1 (653-686)||(9882073-9882106)
chr1 (22-99)||(26515676-26515752)
chr1 (653-686)||(46865316-46865349)
chr1 (31-103)||(27232304-27232376)
chr1 (652-686)||(12720881-12720915)
chr1 (652-686)||(16913610-16913644)
chr1 (652-686)||(41063269-41063303)
chr1 (652-685)||(6775959-6775992)
chr1 (27-100)||(8904724-8904796)
chr1 (653-686)||(17661123-17661156)
[»] chr6 (5 HSPs)
chr6 (653-686)||(9060163-9060196)
chr6 (652-686)||(12351619-12351653)
chr6 (652-686)||(33547618-33547652)
chr6 (653-686)||(5360482-5360515)
chr6 (653-686)||(9885316-9885349)
[»] chr2 (4 HSPs)
chr2 (27-100)||(11673487-11673559)
chr2 (656-686)||(13134653-13134683)
chr2 (653-686)||(8430365-8430398)
chr2 (653-686)||(22192248-22192281)
[»] scaffold0284 (1 HSPs)
scaffold0284 (652-686)||(1552-1586)
[»] chr8 (5 HSPs)
chr8 (652-686)||(2265411-2265445)
chr8 (652-686)||(9631474-9631508)
chr8 (652-686)||(26399040-26399074)
chr8 (652-686)||(41527733-41527767)
chr8 (653-686)||(19256283-19256316)
[»] chr7 (5 HSPs)
chr7 (652-686)||(1907427-1907461)
chr7 (652-686)||(11890180-11890214)
chr7 (35-105)||(35195352-35195422)
chr7 (653-683)||(38090336-38090366)
chr7 (652-686)||(48933208-48933242)
[»] chr3 (6 HSPs)
chr3 (652-686)||(17582334-17582368)
chr3 (652-686)||(20761983-20762017)
chr3 (652-686)||(21020133-21020167)
chr3 (652-686)||(28390041-28390075)
chr3 (652-686)||(46012761-46012795)
chr3 (653-686)||(5565791-5565824)
[»] scaffold0087 (1 HSPs)
scaffold0087 (653-686)||(37820-37853)


Alignment Details
Target: chr4 (Bit Score: 514; Significance: 0; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 514; E-Value: 0
Query Start/End: Original strand, 145 - 781
Target Start/End: Original strand, 36087414 - 36088070
Alignment:
Q  145 aaaattttgagtcccctatatttgaggccctgtgtcaaaggccttgttgcacttgcacaatgccggccttgagagtcatacaagttacgaaagcccattt 244  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  36087414 aaaattttgagtcccctatatttgaggccctctgtcaaaggccttgttgcacttgcacgatgccggccttgagagtcatacaagttacgaaagcccattt 36087513  T
Q  245 caccatgagacttactaattgaaaatgggcaattctatatat---------------agcgaatttgtcaagaatagctgaatactattaaatatcttcc 329  Q
    ||||||||||||||||||||||||||||||||||||||||||               |||||||||||||||||||||| ||||||||||||||||||||    
T  36087514 caccatgagacttactaattgaaaatgggcaattctatatatagcgatgacaaatatagcgaatttgtcaagaatagctaaatactattaaatatcttcc 36087613  T
Q  330 actaaccatacaagagtagttaaaaatgaaattgaagaattgacttcgaactgggcaagatcactcgtgatggttcgtgagactgattgtcatgataaaa 429  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  36087614 actaaccatacaagagtagttaaaaatgaaattgaagaattgacttccaactgggcaagatcactcgtgatggttcgtgagactgattgtcacgataaaa 36087713  T
Q  430 accatttcgcattgaaaattgtctccttaaagctagtttaccgctctcgttgtttccaccccagccccaccaaaatgaattcacgagtttctgaatctca 529  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36087714 accatttcccattgaaaattgtctccttaaagctagtttaccgctctcattgtttccaccccagccccaccaaaatgaattcacgagtttctgaatctca 36087813  T
Q  530 tcccctaaataccgaggactaagaaaaatactcatgtac----tatgtaggaatagattgtatcatcaacttgatcatcacttc-tctacctgttatggc 624  Q
    |||||||||||||||||||||||||||||||||||||||    ||||||||||||||||| ||||||||||||||||||||||| | | ||| |||||||    
T  36087814 tcccctaaataccgaggactaagaaaaatactcatgtactatatatgtaggaatagattgcatcatcaacttgatcatcacttcttttcccttttatggc 36087913  T
Q  625 taacgatccacctgtctcgtgattgctgaatttgtgagggattttattttttccgtcactaaaacatactgattcatctcgctgcgtaatcaatccctac 724  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||  ||||||||| |||    
T  36087914 taacgatccacctgtctcgtgattgctgaatttgtgagggattttattttttccgtcactaaaacatactgattcatcacgctgcacaatcaatccgtac 36088013  T
Q  725 gagacttataataatacagtaaaagacttgctgcaatttggcaatggtattttctga 781  Q
    | | |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36088014 gtggcttataataatacagtaaaagacttgctgcaatttggcaatggtattttctga 36088070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 20 - 121
Target Start/End: Original strand, 36087294 - 36087395
Alignment:
Q  20 tttatccatggataatgcataattgacagcaaaattgttgtttttcagactttcatctacggaaaaaggatatttagtgacggatattcatcgtaggtac 119  Q
    ||||||||| ||||||||||||| |||| |||||||||||| ||||||||||||| |||||||||||||| |||||||||| ||||||||||||||||||    
T  36087294 tttatccatagataatgcataatcgacaacaaaattgttgtctttcagactttcacctacggaaaaaggacatttagtgacagatattcatcgtaggtac 36087393  T
Q  120 aa 121  Q
    ||    
T  36087394 aa 36087395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 652 - 686
Target Start/End: Original strand, 313657 - 313691
Alignment:
Q  652 gaatttgtgagggattttattttttccgtcactaa 686  Q
    |||||| ||||||||||||||||||||||||||||    
T  313657 gaatttatgagggattttattttttccgtcactaa 313691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 652 - 686
Target Start/End: Original strand, 1638517 - 1638551
Alignment:
Q  652 gaatttgtgagggattttattttttccgtcactaa 686  Q
    |||| ||||||||||||||||||||||||||||||    
T  1638517 gaatatgtgagggattttattttttccgtcactaa 1638551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 652 - 686
Target Start/End: Complemental strand, 22128379 - 22128345
Alignment:
Q  652 gaatttgtgagggattttattttttccgtcactaa 686  Q
    ||||||||||| |||||||||||||||||||||||    
T  22128379 gaatttgtgagagattttattttttccgtcactaa 22128345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 652 - 686
Target Start/End: Original strand, 34557253 - 34557287
Alignment:
Q  652 gaatttgtgagggattttattttttccgtcactaa 686  Q
    |||||||||| ||||||||||||||||||||||||    
T  34557253 gaatttgtgaaggattttattttttccgtcactaa 34557287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 653 - 686
Target Start/End: Original strand, 6553875 - 6553908
Alignment:
Q  653 aatttgtgagggattttattttttccgtcactaa 686  Q
    ||||| ||||||||||||||||||||||||||||    
T  6553875 aatttatgagggattttattttttccgtcactaa 6553908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 653 - 686
Target Start/End: Complemental strand, 32175803 - 32175770
Alignment:
Q  653 aatttgtgagggattttattttttccgtcactaa 686  Q
    ||||||||||| ||||||||||||||||||||||    
T  32175803 aatttgtgaggaattttattttttccgtcactaa 32175770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 653 - 686
Target Start/End: Complemental strand, 46286295 - 46286262
Alignment:
Q  653 aatttgtgagggattttattttttccgtcactaa 686  Q
    ||||||||||| ||||||||||||||||||||||    
T  46286295 aatttgtgaggaattttattttttccgtcactaa 46286262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 50; Significance: 5e-19; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 5e-19
Query Start/End: Original strand, 31 - 100
Target Start/End: Complemental strand, 36855305 - 36855236
Alignment:
Q  31 ataatgcataattgacagcaaaattgttgtttttcagactttcatctacggaaaaaggatatttagtgac 100  Q
    |||||||||||||||||||||||||| ||| ||||||||||| | |||||||||||||| ||||||||||    
T  36855305 ataatgcataattgacagcaaaattgctgtctttcagacttttacctacggaaaaaggacatttagtgac 36855236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 18 - 86
Target Start/End: Original strand, 10240708 - 10240776
Alignment:
Q  18 tatttatccatggataatgcataattgacagcaaaattgttgtttttcagactttcatctacggaaaaa 86  Q
    |||||| || ||||||||||||||||||||||||||||| ||| ||||||||||| || || |||||||    
T  10240708 tatttacccctggataatgcataattgacagcaaaattgctgtctttcagacttttatgtatggaaaaa 10240776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 101
Target Start/End: Complemental strand, 5069182 - 5069100
Alignment:
Q  19 atttatccatggataatgcataattgacagcaaaattgttgtttttcagactttcatctacggaaaaaggatatttagtgacg 101  Q
    ||||||||||| | ||||||||||||||| ||||||||| || ||||| ||||| |  |||| ||||  |||||||| |||||    
T  5069182 atttatccatgaacaatgcataattgacaacaaaattgtagtctttcaaacttttacttacgaaaaattgatatttaatgacg 5069100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 656 - 686
Target Start/End: Complemental strand, 10420315 - 10420285
Alignment:
Q  656 ttgtgagggattttattttttccgtcactaa 686  Q
    |||||||||||||||||||||||||||||||    
T  10420315 ttgtgagggattttattttttccgtcactaa 10420285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 652 - 686
Target Start/End: Complemental strand, 16121906 - 16121872
Alignment:
Q  652 gaatttgtgagggattttattttttccgtcactaa 686  Q
    |||||||||||| ||||||||||||||||||||||    
T  16121906 gaatttgtgaggaattttattttttccgtcactaa 16121872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 652 - 686
Target Start/End: Complemental strand, 20188008 - 20187974
Alignment:
Q  652 gaatttgtgagggattttattttttccgtcactaa 686  Q
    |||||||||||| ||||||||||||||||||||||    
T  20188008 gaatttgtgaggaattttattttttccgtcactaa 20187974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 652 - 686
Target Start/End: Complemental strand, 23974643 - 23974609
Alignment:
Q  652 gaatttgtgagggattttattttttccgtcactaa 686  Q
    ||||||||||| |||||||||||||||||||||||    
T  23974643 gaatttgtgagagattttattttttccgtcactaa 23974609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 653 - 686
Target Start/End: Complemental strand, 13620193 - 13620160
Alignment:
Q  653 aatttgtgagggattttattttttccgtcactaa 686  Q
    |||||||||| |||||||||||||||||||||||    
T  13620193 aatttgtgagagattttattttttccgtcactaa 13620160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.0000000004; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 27 - 121
Target Start/End: Complemental strand, 22572170 - 22572076
Alignment:
Q  27 atggataatgcataattgacagcaaaattgttgtttttcagactttcatctacggaaaaaggatatttagtgacggatattcatcgtaggtacaa 121  Q
    ||||||||||||||||| |||| ||||||| ||| ||| ||||||| | |||| |||||| || ||||||||| |||| || |  ||||||||||    
T  22572170 atggataatgcataattaacagtaaaattgatgtcttttagactttaacctacagaaaaatgacatttagtgatggattttaacggtaggtacaa 22572076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 653 - 686
Target Start/End: Complemental strand, 9882106 - 9882073
Alignment:
Q  653 aatttgtgagggattttattttttccgtcactaa 686  Q
    ||||||||||||||||||||||||||||||||||    
T  9882106 aatttgtgagggattttattttttccgtcactaa 9882073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 22 - 99
Target Start/End: Complemental strand, 26515752 - 26515676
Alignment:
Q  22 tatccatggataatgcataattgacagcaaaattgttgtttttcagactttcatctacggaaaaaggatatttagtga 99  Q
    |||| ||||| ||||||||||||||| |||||||||||| ||||| ||||  | |||| ||||||||| |||||||||    
T  26515752 tatctatggacaatgcataattgacaacaaaattgttgtctttcaaacttctacctac-gaaaaaggacatttagtga 26515676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 653 - 686
Target Start/End: Original strand, 46865316 - 46865349
Alignment:
Q  653 aatttgtgagggattttattttttccgtcactaa 686  Q
    ||||||||||||||||||||||||||||||||||    
T  46865316 aatttgtgagggattttattttttccgtcactaa 46865349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 31 - 103
Target Start/End: Original strand, 27232304 - 27232376
Alignment:
Q  31 ataatgcataattgacagcaaaattgttgtttttcagactttcatctacggaaaaaggatatttagtgacgga 103  Q
    |||||||||||||||||  ||| ||||||| |||||| |||| | |||||||||||  | |||||||||||||    
T  27232304 ataatgcataattgacaataaagttgttgtctttcagtcttttacctacggaaaaaatacatttagtgacgga 27232376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 652 - 686
Target Start/End: Original strand, 12720881 - 12720915
Alignment:
Q  652 gaatttgtgagggattttattttttccgtcactaa 686  Q
    |||||||||||| ||||||||||||||||||||||    
T  12720881 gaatttgtgaggaattttattttttccgtcactaa 12720915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 652 - 686
Target Start/End: Complemental strand, 16913644 - 16913610
Alignment:
Q  652 gaatttgtgagggattttattttttccgtcactaa 686  Q
    |||||||||||| ||||||||||||||||||||||    
T  16913644 gaatttgtgaggaattttattttttccgtcactaa 16913610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 652 - 686
Target Start/End: Original strand, 41063269 - 41063303
Alignment:
Q  652 gaatttgtgagggattttattttttccgtcactaa 686  Q
    |||| ||||||||||||||||||||||||||||||    
T  41063269 gaatatgtgagggattttattttttccgtcactaa 41063303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 652 - 685
Target Start/End: Original strand, 6775959 - 6775992
Alignment:
Q  652 gaatttgtgagggattttattttttccgtcacta 685  Q
    ||||||||||||||||||||||||||| ||||||    
T  6775959 gaatttgtgagggattttattttttccatcacta 6775992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 27 - 100
Target Start/End: Complemental strand, 8904796 - 8904724
Alignment:
Q  27 atggataatgcataattgacagcaaaattgttgtttttcagactttcatctacggaaaaaggatatttagtgac 100  Q
    |||||||||||||||||||| | ||||||| ||| |||  |||||| ||||||||||||| || ||||| ||||    
T  8904796 atggataatgcataattgacggtaaaattgatgtcttt-ggacttttatctacggaaaaatgacatttaatgac 8904724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 653 - 686
Target Start/End: Original strand, 17661123 - 17661156
Alignment:
Q  653 aatttgtgagggattttattttttccgtcactaa 686  Q
    ||||||||||| ||||||||||||||||||||||    
T  17661123 aatttgtgaggaattttattttttccgtcactaa 17661156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.000000002; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 653 - 686
Target Start/End: Original strand, 9060163 - 9060196
Alignment:
Q  653 aatttgtgagggattttattttttccgtcactaa 686  Q
    ||||||||||||||||||||||||||||||||||    
T  9060163 aatttgtgagggattttattttttccgtcactaa 9060196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 652 - 686
Target Start/End: Complemental strand, 12351653 - 12351619
Alignment:
Q  652 gaatttgtgagggattttattttttccgtcactaa 686  Q
    |||||||||||| ||||||||||||||||||||||    
T  12351653 gaatttgtgaggaattttattttttccgtcactaa 12351619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 652 - 686
Target Start/End: Original strand, 33547618 - 33547652
Alignment:
Q  652 gaatttgtgagggattttattttttccgtcactaa 686  Q
    |||||||||||||||||||||||||||||| ||||    
T  33547618 gaatttgtgagggattttattttttccgtccctaa 33547652  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 653 - 686
Target Start/End: Original strand, 5360482 - 5360515
Alignment:
Q  653 aatttgtgagggattttattttttccgtcactaa 686  Q
    ||||||||||| ||||||||||||||||||||||    
T  5360482 aatttgtgaggaattttattttttccgtcactaa 5360515  T

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Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 653 - 686
Target Start/End: Original strand, 9885316 - 9885349
Alignment:
Q  653 aatttgtgagggattttattttttccgtcactaa 686  Q
    |||||||||| |||||||||||||||||||||||    
T  9885316 aatttgtgagagattttattttttccgtcactaa 9885349  T

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Target: chr2 (Bit Score: 34; Significance: 0.000000002; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 27 - 100
Target Start/End: Original strand, 11673487 - 11673559
Alignment:
Q  27 atggataatgcataattgacagcaaaattgttgtttttcagactttcatctacggaaaaaggatatttagtgac 100  Q
    |||||||||||||||||||||||||||||| ||| ||||| ||||| | |||  |||||| || ||||||||||    
T  11673487 atggataatgcataattgacagcaaaattgatgtctttca-acttttacctatagaaaaatgacatttagtgac 11673559  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 656 - 686
Target Start/End: Complemental strand, 13134683 - 13134653
Alignment:
Q  656 ttgtgagggattttattttttccgtcactaa 686  Q
    |||||||||||||||||||||||||||||||    
T  13134683 ttgtgagggattttattttttccgtcactaa 13134653  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 653 - 686
Target Start/End: Original strand, 8430365 - 8430398
Alignment:
Q  653 aatttgtgagggattttattttttccgtcactaa 686  Q
    ||||||||||| ||||||||||||||||||||||    
T  8430365 aatttgtgaggaattttattttttccgtcactaa 8430398  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 653 - 686
Target Start/End: Original strand, 22192248 - 22192281
Alignment:
Q  653 aatttgtgagggattttattttttccgtcactaa 686  Q
    |||||||||| |||||||||||||||||||||||    
T  22192248 aatttgtgagagattttattttttccgtcactaa 22192281  T

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Target: scaffold0284 (Bit Score: 31; Significance: 0.0000001; HSPs: 1)
Name: scaffold0284
Description:

Target: scaffold0284; HSP #1
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 652 - 686
Target Start/End: Complemental strand, 1586 - 1552
Alignment:
Q  652 gaatttgtgagggattttattttttccgtcactaa 686  Q
    |||||| ||||||||||||||||||||||||||||    
T  1586 gaatttatgagggattttattttttccgtcactaa 1552  T

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Target: chr8 (Bit Score: 31; Significance: 0.0000001; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 652 - 686
Target Start/End: Complemental strand, 2265445 - 2265411
Alignment:
Q  652 gaatttgtgagggattttattttttccgtcactaa 686  Q
    |||||||||| ||||||||||||||||||||||||    
T  2265445 gaatttgtgaaggattttattttttccgtcactaa 2265411  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 652 - 686
Target Start/End: Original strand, 9631474 - 9631508
Alignment:
Q  652 gaatttgtgagggattttattttttccgtcactaa 686  Q
    |||||||||||| ||||||||||||||||||||||    
T  9631474 gaatttgtgaggaattttattttttccgtcactaa 9631508  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 652 - 686
Target Start/End: Complemental strand, 26399074 - 26399040
Alignment:
Q  652 gaatttgtgagggattttattttttccgtcactaa 686  Q
    ||||||||||| |||||||||||||||||||||||    
T  26399074 gaatttgtgagagattttattttttccgtcactaa 26399040  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 652 - 686
Target Start/End: Complemental strand, 41527767 - 41527733
Alignment:
Q  652 gaatttgtgagggattttattttttccgtcactaa 686  Q
    |||||| ||||||||||||||||||||||||||||    
T  41527767 gaatttatgagggattttattttttccgtcactaa 41527733  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 653 - 686
Target Start/End: Original strand, 19256283 - 19256316
Alignment:
Q  653 aatttgtgagggattttattttttccgtcactaa 686  Q
    ||||||||||| ||||||||||||||||||||||    
T  19256283 aatttgtgaggaattttattttttccgtcactaa 19256316  T

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Target: chr7 (Bit Score: 31; Significance: 0.0000001; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 652 - 686
Target Start/End: Original strand, 1907427 - 1907461
Alignment:
Q  652 gaatttgtgagggattttattttttccgtcactaa 686  Q
    |||| ||||||||||||||||||||||||||||||    
T  1907427 gaatatgtgagggattttattttttccgtcactaa 1907461  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 652 - 686
Target Start/End: Complemental strand, 11890214 - 11890180
Alignment:
Q  652 gaatttgtgagggattttattttttccgtcactaa 686  Q
    |||||| ||||||||||||||||||||||||||||    
T  11890214 gaatttatgagggattttattttttccgtcactaa 11890180  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 35 - 105
Target Start/End: Original strand, 35195352 - 35195422
Alignment:
Q  35 tgcataattgacagcaaaattgttgtttttcagactttcatctacggaaaaaggatatttagtgacggata 105  Q
    ||||||||||||| || ||||||||| ||| |||| || | |||| |||||| |||||||| |||||||||    
T  35195352 tgcataattgacatcataattgttgtattttagacatttacctacagaaaaaagatatttaatgacggata 35195422  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 653 - 683
Target Start/End: Original strand, 38090336 - 38090366
Alignment:
Q  653 aatttgtgagggattttattttttccgtcac 683  Q
    |||||||||||||||||||||||||||||||    
T  38090336 aatttgtgagggattttattttttccgtcac 38090366  T

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Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 652 - 686
Target Start/End: Original strand, 48933208 - 48933242
Alignment:
Q  652 gaatttgtgagggattttattttttccgtcactaa 686  Q
    |||||||||||| ||||||||||||||||||||||    
T  48933208 gaatttgtgaggaattttattttttccgtcactaa 48933242  T

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Target: chr3 (Bit Score: 31; Significance: 0.0000001; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 652 - 686
Target Start/End: Complemental strand, 17582368 - 17582334
Alignment:
Q  652 gaatttgtgagggattttattttttccgtcactaa 686  Q
    |||||||||||| ||||||||||||||||||||||    
T  17582368 gaatttgtgaggaattttattttttccgtcactaa 17582334  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 652 - 686
Target Start/End: Complemental strand, 20762017 - 20761983
Alignment:
Q  652 gaatttgtgagggattttattttttccgtcactaa 686  Q
    ||||||||||| |||||||||||||||||||||||    
T  20762017 gaatttgtgagagattttattttttccgtcactaa 20761983  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 652 - 686
Target Start/End: Original strand, 21020133 - 21020167
Alignment:
Q  652 gaatttgtgagggattttattttttccgtcactaa 686  Q
    ||||||||||| |||||||||||||||||||||||    
T  21020133 gaatttgtgagagattttattttttccgtcactaa 21020167  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 652 - 686
Target Start/End: Original strand, 28390041 - 28390075
Alignment:
Q  652 gaatttgtgagggattttattttttccgtcactaa 686  Q
    ||||||||||| |||||||||||||||||||||||    
T  28390041 gaatttgtgagagattttattttttccgtcactaa 28390075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 652 - 686
Target Start/End: Complemental strand, 46012795 - 46012761
Alignment:
Q  652 gaatttgtgagggattttattttttccgtcactaa 686  Q
    ||||||||||| |||||||||||||||||||||||    
T  46012795 gaatttgtgagagattttattttttccgtcactaa 46012761  T

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Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 653 - 686
Target Start/End: Original strand, 5565791 - 5565824
Alignment:
Q  653 aatttgtgagggattttattttttccgtcactaa 686  Q
    |||||||||| |||||||||||||||||||||||    
T  5565791 aatttgtgagagattttattttttccgtcactaa 5565824  T

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Target: scaffold0087 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: scaffold0087
Description:

Target: scaffold0087; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 653 - 686
Target Start/End: Complemental strand, 37853 - 37820
Alignment:
Q  653 aatttgtgagggattttattttttccgtcactaa 686  Q
    ||||||||||| ||||||||||||||||||||||    
T  37853 aatttgtgaggaattttattttttccgtcactaa 37820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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