View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6336_high_14 (Length: 319)

Name: NF6336_high_14
Description: NF6336
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6336_high_14
NF6336_high_14
[»] chr2 (10 HSPs)
chr2 (1-301)||(31420882-31421184)
chr2 (74-274)||(31384736-31384937)
chr2 (16-144)||(31318577-31318705)
chr2 (4-274)||(31254014-31254283)
chr2 (4-124)||(31291709-31291829)
chr2 (60-274)||(31281031-31281233)
chr2 (74-146)||(31374099-31374171)
chr2 (59-136)||(31305324-31305401)
chr2 (74-145)||(31359376-31359444)
chr2 (172-274)||(31291559-31291661)
[»] chr5 (1 HSPs)
chr5 (74-146)||(36212507-36212579)


Alignment Details
Target: chr2 (Bit Score: 272; Significance: 1e-152; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 1 - 301
Target Start/End: Original strand, 31420882 - 31421184
Alignment:
Q  1 actaaatctttcatcaagtctctgattgtcgcataattataatattctaaatcaaatattatgacttgtgtgcagagatctttcatacaataacgtcagc 100  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||    
T  31420882 actaaatgtttcatcaagtctctgattgtcgcataattataatattctaaatcaaatattatgacttgtgtacagagatctttcatacaataacttcagc 31420981  T
Q  101 atcagccaagggagtcagatatgtaaagatgaaaatgtgtaagaatatcctttgcatttgtttcacttg--tatgcaaacttaagaacctttctgagaca 198  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||  |||||||||||||||||||||||||||||    
T  31420982 atcagccaagggagtcagatatgtaaagatgaaaatgtgtaagaatatcctttgcatttatttcacttgtatatgcaaacttaagaacctttctgagaca 31421081  T
Q  199 caatcttctctaatatgtcacaggaatttattttctccctcatggggacgcaatgacacgtaagtttggtattatataaagccttttccattccgctctt 298  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  31421082 caatcttctctaatatgtcacaggaatttattttctccctcatggggacgcaatgacacgtaagtttggtattatataaagccttttccattccgctgtt 31421181  T
Q  299 att 301  Q
    |||    
T  31421182 att 31421184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 74 - 274
Target Start/End: Complemental strand, 31384937 - 31384736
Alignment:
Q  74 agagatctttcatacaataacgtcagcatcagc---caagggagtcagatatgtaaagatgaaaatgtgtaagaatatcctttgcatttgttt-cacttg 169  Q
    ||||||||||||||||||||| ||| ||||||    ||| ||||||| |||||  |||||||||| ||||||||||   | ||| |||||| | ||||||    
T  31384937 agagatctttcatacaataacttcaacatcagtactcaaaggagtcacatatgccaagatgaaaaagtgtaagaat---ccttgtatttgtgtgcacttg 31384841  T
Q  170 tatgcaaacttaagaacctttctgagacacaatcttctctaatatgtcacaggaatttattttctccctcatggggacgcaatgacacgtaagtttggta 269  Q
    | || ||||||| ||||||||||||||||| | ||||||||||||||| |||||| || |||||| | ||||||  ||||||||||| ||||||||||||    
T  31384840 tttgtaaacttaggaacctttctgagacaccaacttctctaatatgtcgcaggaacttgttttctacttcatggacacgcaatgacatgtaagtttggta 31384741  T
Q  270 ttata 274  Q
    |||||    
T  31384740 ttata 31384736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 16 - 144
Target Start/End: Complemental strand, 31318705 - 31318577
Alignment:
Q  16 aagtctctgattgtcgcataattataatattctaaatcaaatattatgacttgtgtgcagagatctttcatacaataacgtcagcatcagccaagggagt 115  Q
    |||||||| ||||||| || ||||| |||||||||||||||   ||| ||||| ||| ||||||||||||||||||||| ||||||| ||||||||||||    
T  31318705 aagtctctaattgtcgaattattatcatattctaaatcaaagtatataacttgggtgtagagatctttcatacaataacttcagcattagccaagggagt 31318606  T
Q  116 cagatatgtaaagatgaaaatgtgtaaga 144  Q
    || |||||| ||||| |||| ||| ||||    
T  31318605 catatatgtcaagatcaaaaagtgcaaga 31318577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 4 - 274
Target Start/End: Complemental strand, 31254283 - 31254014
Alignment:
Q  4 aaatctttcatcaagtctctgattgtcgcataattataatattctaaatcaaatattatgacttgtgtgcagagatctttcatacaataacgtcagcatc 103  Q
    ||||||||||| |||| || ||||||   || ||||| ||| ||| |||||||| ||||||||||| |  |||||| |||||||||||||| | |||| |    
T  31254283 aaatctttcattaagtatccgattgttatattattatcataatctgaatcaaattttatgacttgtatatagagatatttcatacaataacttaagcaac 31254184  T
Q  104 agccaagggagtcagatatgtaaagatgaaaatgtgtaagaatatcctttgcatttgt-ttcact-tgtatgcaaacttaagaacctttctgagacacaa 201  Q
    ||||||||||||||||||||| ||  ||| ||  |||||||||   | |||||||| | | || | | | ||||||||| | |||||||||||||||  |    
T  31254183 agccaagggagtcagatatgtcaaagtgataaactgtaagaat---ccttgcatttttgtgcattatttttgcaaactttaaaacctttctgagacaaca 31254087  T
Q  202 tcttctctaatatgtcacaggaatttattttctccctcatggggacgcaatgacacgtaagtttggtattata 274  Q
      || ||| | | |||||||||| || |||||||| |||| || || |||||||| ||||||||||| |||||    
T  31254086 ctttttcttaaacgtcacaggaacttgttttctccttcattggcacacaatgacatgtaagtttggtcttata 31254014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 4 - 124
Target Start/End: Complemental strand, 31291829 - 31291709
Alignment:
Q  4 aaatctttcatcaagtctctgattgtcgcataattataatattctaaatcaaatattatgacttgtgtgcagagatctttcatacaataacgtcagcatc 103  Q
    |||| |||||| ||||||||||| ||  ||| || || ||||||| |||||||| ||||| ||||| |  || |||||||||||||||||| | ||||||    
T  31291829 aaatgtttcattaagtctctgatcgtatcatcatcatcatattctgaatcaaattttatggcttgtatatagtgatctttcatacaataacttaagcatc 31291730  T
Q  104 agccaagggagtcagatatgt 124  Q
    |||||||||| ||||||||||    
T  31291729 agccaagggaatcagatatgt 31291709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 60 - 274
Target Start/End: Complemental strand, 31281233 - 31281031
Alignment:
Q  60 tatgacttgtgtgcagagatctttcatacaataacgtcagcatcagccaagggagtcagatatgtaaagatgaaaatgtgtaagaatatcctttgcattt 159  Q
    |||||||||| |  ||||||||||| ||||||||| ||| |||||| |||||||||||||||||| |  ||||||| |||||||||||    ||||||||    
T  31281233 tatgacttgtatatagagatctttcttacaataacttcaacatcagacaagggagtcagatatgtcaccatgaaaaagtgtaagaata---cttgcattt 31281137  T
Q  160 gtttcacttgtatgcaaacttaagaacctttctgagacacaatcttctctaatatgtcacaggaatttattttctccctcatggggacgcaatgacacgt 259  Q
    |||         |||||| || | ||||||| |||||||| | ||| |||||| | |  |||||| || |||||| ||||||||| || |||| ||| ||    
T  31281136 gtt---------tgcaaatttcacaacctttttgagacacgaccttttctaatttcttgcaggaacttgttttctacctcatgggcacacaattacatgt 31281046  T
Q  260 aagtttggtattata 274  Q
    ||||||||| |||||    
T  31281045 aagtttggtcttata 31281031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 74 - 146
Target Start/End: Complemental strand, 31374171 - 31374099
Alignment:
Q  74 agagatctttcatacaataacgtcagcatcagccaagggagtcagatatgtaaagatgaaaatgtgtaagaat 146  Q
    ||||| ||||| ||||||||| ||| ||||||||||| ||||||||||||| | |||||||| ||||||||||    
T  31374171 agagacctttcttacaataacttcaacatcagccaagagagtcagatatgtcacgatgaaaaagtgtaagaat 31374099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 59 - 136
Target Start/End: Complemental strand, 31305401 - 31305324
Alignment:
Q  59 ttatgacttgtgtgcagagatctttcatacaataacgtcagcatcagccaagggagtcagatatgtaaagatgaaaat 136  Q
    ||||||||||| | |||||||||||||||||||||  ||||||||| | ||| || ||||| |||| ||||| |||||    
T  31305401 ttatgacttgtatacagagatctttcatacaataatttcagcatcaacgaagtgaatcagaaatgtcaagatcaaaat 31305324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 74 - 145
Target Start/End: Complemental strand, 31359444 - 31359376
Alignment:
Q  74 agagatctttcatacaataacgtcagcatcagccaagggagtcagatatgtaaagatgaaaatgtgtaagaa 145  Q
    ||||||||||||||||||||| |||||||||||   | || ||||| |||| |||||||||| |||||||||    
T  31359444 agagatctttcatacaataacttcagcatcagc---gagaatcagaaatgtcaagatgaaaaagtgtaagaa 31359376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 172 - 274
Target Start/End: Complemental strand, 31291661 - 31291559
Alignment:
Q  172 tgcaaacttaagaacctttctgagacacaatcttctctaatatgtcacaggaatttattttctccctcatggggacgcaatgacacgtaagtttggtatt 271  Q
    ||||||||||| ||||||| || ||||  | | | |||||||||||  ||||| || ||||||||||||| || || |||||||| |||||||| || ||    
T  31291661 tgcaaacttaacaacctttttgtgacaacaccatttctaatatgtcgtaggaacttgttttctccctcattggcacacaatgacatgtaagtttagtctt 31291562  T
Q  272 ata 274  Q
    |||    
T  31291561 ata 31291559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 74 - 146
Target Start/End: Complemental strand, 36212579 - 36212507
Alignment:
Q  74 agagatctttcatacaataacgtcagcatcagccaagggagtcagatatgtaaagatgaaaatgtgtaagaat 146  Q
    |||||| |||| ||||||||| |||  || |||||||||||||||  |||| |||||| ||||||||||||||    
T  36212579 agagatatttcttacaataacttcactataagccaagggagtcagccatgtcaagatggaaatgtgtaagaat 36212507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University