View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6336_high_2 (Length: 978)
Name: NF6336_high_2
Description: NF6336
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6336_high_2 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 733; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 733; E-Value: 0
Query Start/End: Original strand, 206 - 966
Target Start/End: Original strand, 1885563 - 1886322
Alignment:
| Q |
206 |
atattcattatatggaaatgagtagatgaaaagcaaagagtgaaataccaatttgcctttgcaattgtagagattggacaatttagtttttgaaatttga |
305 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
1885563 |
atatccattatatggaaatgagtagatgaaaagcaaagagtgaaataccaatttgcctttgcaattgtagagatcggacaatttagtttttgaaatttga |
1885662 |
T |
|
| Q |
306 |
tggaatttcaaaataattcttgaaattgggagattctcgatgaaattaatttctgttgaataattttagtaactaaattgaccgactcaaaaggaataat |
405 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1885663 |
tggaatttcaaaataattcttgaaattgg-agattctcgatgaaattaatttctgttgagtaattttagtaactaaattgaccgactcaaaaggaataat |
1885761 |
T |
|
| Q |
406 |
gtggtcgaggattctcaattcaaagactattttatagactaagttgacaatatcgtattattttagggacaactttggtgattcactcaaatattaggat |
505 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1885762 |
gtggtcgaggattctcaattcaaagactattttatagactaagttgacaatatcgtattattttagggacaactttggtgattcactcaaatattaggat |
1885861 |
T |
|
| Q |
506 |
caaaagtatattgatgatgaatgtatggtagctcagcttaaattttattacattagatttctgctgctagatttcttatcagtgaagtaaactaacaggc |
605 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
1885862 |
caaaagtatattgatgatgaatgtatggtagctcagcttaaattttattacattagatttctgctgctggatttcttatcagtgaagtaaactaacaggc |
1885961 |
T |
|
| Q |
606 |
acatccaacactttctgagcatgaaaggaagcgactctgccgcgtaatggattgccagaaactctcaattgatgcatgcatgcatgctgcacaaaatgaa |
705 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1885962 |
acatccaacactttctgagcatgaaaggaagcgactctgccgcgtaatggattgccagaaactctcaattgatgcatgcatgcatgctgcacaaaatgaa |
1886061 |
T |
|
| Q |
706 |
aggcttccattgagggtagttgtgcaagtcctatttgcagaacaggtaaagataagtactgcactatccaacccttctttgaaagatgttgaatccttta |
805 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1886062 |
aggcttccattgagggtagttgtgcaagtcctatttgcagaacaggtaaagataagtactgcactatccaacccttctttgaaagatgttgaatccttta |
1886161 |
T |
|
| Q |
806 |
ctcaaccaatggttacaaaccgaaaaacacttctcgaggcgacaccacaatcattccaagaaggatggacaactgctaaaaaagatgtcaacacactaaa |
905 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1886162 |
ctcaaccaatggttacaaaccgaaaaacacttctcgaggcgacaccacaatcattccaagaaggatggacaactgctaaaaaagatgtcaacacactaaa |
1886261 |
T |
|
| Q |
906 |
gtttgagctagagagtgtgaaagctaagtacttagagcttcaaaatgatatggaaaatttg |
966 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1886262 |
gtttgagctggagagtgtgaaagctaagtacttagagcttcaaaatgatatggaaaatttg |
1886322 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 157; Significance: 6e-83; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 157; E-Value: 6e-83
Query Start/End: Original strand, 27 - 215
Target Start/End: Complemental strand, 40715649 - 40715461
Alignment:
| Q |
27 |
aagagtttgtgagagaattttcacgttccaaattcttgaaaacaataagtaacataaaaaataatttggcatttatgtagttattttaataaaaaataca |
126 |
Q |
| |
|
|||| |||||||| |||||||| | |||||||||||||||||||| ||||||||| |||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
40715649 |
aagattttgtgagggaattttccctttccaaattcttgaaaacaagaagtaacatgaaaaataatttggcatttttgtagttattttaataaaaaataca |
40715550 |
T |
|
| Q |
127 |
gtatcatataatatgaaaacatgaaccaaccaatggagagcacatgcttaatactgctagtttttattttcaatgttatatattcatta |
215 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
40715549 |
gtatcatataatatgaaaacatgaaccaaccaatggagagcacatgcttaatactgctagtatttattttcaatgttatatattcatta |
40715461 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 100; Significance: 6e-49; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 100; E-Value: 6e-49
Query Start/End: Original strand, 598 - 963
Target Start/End: Complemental strand, 37213453 - 37213085
Alignment:
| Q |
598 |
taacaggcacatccaacactttctgagcatgaaaggaagcgactctgccgcgtaatggattgccagaaactctcaattgatgcatgcatgcatgctgcac |
697 |
Q |
| |
|
|||||||||||||||||||| ||||||| ||||||||||| |||||||| ||||||||||| || |||||||| ||||| || |||||||| || || | |
|
|
| T |
37213453 |
taacaggcacatccaacactaactgagcacgaaaggaagcgtctctgccgtgtaatggattgtcaaaaactctccattgacgcctgcatgcacgcagctc |
37213354 |
T |
|
| Q |
698 |
aaaatgaaaggcttccattgagggtagttgtgcaagtcctatttgcagaacaggtaaagataagtactgcactatccaacccttctttgaaaga---tgt |
794 |
Q |
| |
|
|||| ||| | || ||||| |||||||| |||||||| |||| | || || ||||||||||| | ||||||| ||||| ||| | |||| ||| |
|
|
| T |
37213353 |
aaaacgaacgactgccattaagggtagtagtgcaagttttattctctgagcaagtaaagataagcaatgcactagccaacagctctctaaaaggcagtgt |
37213254 |
T |
|
| Q |
795 |
tgaatc-ctttactcaaccaatggttacaaaccgaaaaacacttctcgaggcgacaccacaatcattccaagaaggatggacaactgctaaaaaagatgt |
893 |
Q |
| |
|
|||||| | ||| ||||||||||| |||||| | ||||| |||||||| | |||||| ||||| |||||||||||||||||||| || || ||||| | |
|
|
| T |
37213253 |
tgaatctcagtac-caaccaatggtaacaaacaggaaaacgcttctcgaagggacaccgcaatctttccaagaaggatggacaacagcaaagaaagacat |
37213155 |
T |
|
| Q |
894 |
caacacactaaagtttgagctagagagtgtgaaagctaagtacttagagcttcaaaatgatatggaaaat |
963 |
Q |
| |
|
|||||| |||||||||| || |||||||||||| | ||||| | ||||||||| |||||||||||||| |
|
|
| T |
37213154 |
taacacattaaagtttgaacttgagagtgtgaaaacaaagtatctggagcttcaacatgatatggaaaat |
37213085 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 664 - 704
Target Start/End: Original strand, 37860873 - 37860913
Alignment:
| Q |
664 |
aaactctcaattgatgcatgcatgcatgctgcacaaaatga |
704 |
Q |
| |
|
||||||||| ||||||||||||| ||||||||||||||||| |
|
|
| T |
37860873 |
aaactctcacttgatgcatgcatacatgctgcacaaaatga |
37860913 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University