View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6336_high_21 (Length: 266)
Name: NF6336_high_21
Description: NF6336
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6336_high_21 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 1 - 266
Target Start/End: Complemental strand, 4097575 - 4097310
Alignment:
| Q |
1 |
ctttgatccctcggagaaaatggttgtgacttttacccagaacattacttttgtcttcattccctcgatgtctgctagcttccctttctccagataacca |
100 |
Q |
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| T |
4097575 |
ctttgatccctcggagaaaatggttgtcacttttacccagataattacttttgtcttcattccctcgatgtctgctagctttcctttctccagataacca |
4097476 |
T |
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| Q |
101 |
gtaacggtggtgaagaaacgcaagacggatgaatccttatcgcctacttcgcagacctgaggaatgaagacttgaagcttccccgtctcttcgttaaatt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||| |||||| ||||||||||||||||||| |
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| T |
4097475 |
gtaacggtggtgaagaaacgcaagacggatgaatccttatagcctacttcgcagacctgagggatgaagacttcaagctttcccgtctcttcgttaaatt |
4097376 |
T |
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| Q |
201 |
cgtagtttgttgcatcacgaggaaagattcctattggtagatcatactcctttaacaactctggta |
266 |
Q |
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| T |
4097375 |
cgtagtttgttgcatcacgaggaaagattcctattggtagatcatactcctttaacaactctggta |
4097310 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 71; Significance: 3e-32; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 1 - 263
Target Start/End: Original strand, 25796615 - 25796877
Alignment:
| Q |
1 |
ctttgatccctcggagaaaatggttgtgacttttacccagaacattacttttgtcttcattccctcgatgtctgctagcttccctttctccagataacca |
100 |
Q |
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||||| ||||||||| |||||| || ||||| ||||| | || ||||| |||||||| ||||| || || |||||||| |||||||||| |||||| |
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| T |
25796615 |
ctttggtccctcggatgaaatggcggtaactttcacccacaccaacactttggtcttcataccctctatatcagctagctttcctttctccaagtaacca |
25796714 |
T |
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| Q |
101 |
gtaacggtggtgaagaaacgcaagacggatgaatccttatcgcctacttcgcagacctgaggaatgaagacttgaagcttccccgtctcttcgttaaatt |
200 |
Q |
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| T |
25796715 |
gaaacagtggttgtgaagcgcaagactgatgaatctctatagcctacttcacacacttgaggaatgtaaacaacaagctttcttgtttcttcattgaact |
25796814 |
T |
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| Q |
201 |
cgtagtttgttgcatcacgaggaaagattcctattggtagatcatactcctttaacaactctg |
263 |
Q |
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||||||||||||| ||||| |||||||||||||||||||||||||||||||| | |||||||| |
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| T |
25796815 |
cgtagtttgttgcgtcacggggaaagattcctattggtagatcatactccttcagcaactctg |
25796877 |
T |
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