View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6336_high_26 (Length: 249)
Name: NF6336_high_26
Description: NF6336
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6336_high_26 |
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Alignment Details
Target: chr4 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 243
Target Start/End: Original strand, 22058792 - 22059034
Alignment:
| Q |
1 |
cacatttggttacttacaactaagctttcactttttccaatgttttaatcttcattgatgccccaccgtaaccaccttttcagataaatgatatcatgag |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| | ||| |||||||||||||||||||||||||| |
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| T |
22058792 |
cacatttggttacttacaactaagctttcactttttccaatgttttaatctttattgatgccccaccattacctccttttcagataaatgatatcatgag |
22058891 |
T |
|
| Q |
101 |
accttaattgatgtaacaccttaatttcatgctagataccaaaatttaagttaataaatcacaattaagggtccataacaaagcctttcacctaaatgtc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22058892 |
accttaattgatgtaacaccttaatttcatgctagataccaaaatttaagttaataaatcacaattaagggtccataacaaagcctttcacctaaatgtc |
22058991 |
T |
|
| Q |
201 |
atattctccaagcctctataaaaacctaatccttagtattatc |
243 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||| |
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|
| T |
22058992 |
atattctccaagcctctataaaagcctaatccttagtattatc |
22059034 |
T |
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