View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6336_high_30 (Length: 239)
Name: NF6336_high_30
Description: NF6336
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6336_high_30 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 116; Significance: 4e-59; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 84 - 223
Target Start/End: Original strand, 34535303 - 34535442
Alignment:
| Q |
84 |
taaaagtggttagattcttatattgaaactaacttagaaagtaagaagagtcggctttaacatacttaatttagatcttatctttattttatgtgggaat |
183 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||| |||||||||||||||||||||| |||||||| |
|
|
| T |
34535303 |
taaaagtggttagattcttatattgaaactaacttataaagtaagaagagtcacttttaacatacttattttagatcttatctttattttacgtgggaat |
34535402 |
T |
|
| Q |
184 |
tgagttttcctaatatatattaagtttggtgcatgaatat |
223 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34535403 |
tgagttttcctaatatatattaagtttggtgcatgaatat |
34535442 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 12 - 89
Target Start/End: Original strand, 34534900 - 34534977
Alignment:
| Q |
12 |
cagagacacacattaacaagatcctaacctttttagtgggttacataaaattttcttaacatattaattatataaaag |
89 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||| |
|
|
| T |
34534900 |
cagagacacacgttaacaagatcctaacctttttagtgggttacataaatttttcttaacatattaattatctaaaag |
34534977 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University