View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6336_high_4 (Length: 463)
Name: NF6336_high_4
Description: NF6336
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6336_high_4 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 95; Significance: 3e-46; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 270 - 420
Target Start/End: Original strand, 11195354 - 11195504
Alignment:
| Q |
270 |
atattaagcaagttgcaaagaggaaaatcatgaatcttaacatatatacagaactcgtatacatctgtaaggacaccgaacaaattatcatatagttgac |
369 |
Q |
| |
|
||||||||||||||||||||||| ||| || ||||||||||||||||||||| || ||||||| |||||| || ||| ||||||||||||||||||| |
|
|
| T |
11195354 |
atattaagcaagttgcaaagagggaaaagattaatcttaacatatatacagaagtcatatacatttgtaagcacgttgaataaattatcatatagttgac |
11195453 |
T |
|
| Q |
370 |
attgtcaccataaacttgaaatttaacaatacaatttgaatgaagttttaa |
420 |
Q |
| |
|
||||||||| |||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
11195454 |
attgtcaccttaaacttgaaattttacaatacaatttgaatgaagttttaa |
11195504 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 270 - 420
Target Start/End: Original strand, 11154907 - 11155057
Alignment:
| Q |
270 |
atattaagcaagttgcaaagaggaaaatcatgaatcttaacatatatacagaactcgtatacatctgtaaggacaccgaacaaattatcatatagttgac |
369 |
Q |
| |
|
||||||||||||||||||||||| ||| || || ||| |||||||||||||| || ||||||| | |||| || ||||||||||||||||||||||| |
|
|
| T |
11154907 |
atattaagcaagttgcaaagagggaaaagattaaccttgacatatatacagaagtcatatacatttataagcacgttgaacaaattatcatatagttgac |
11155006 |
T |
|
| Q |
370 |
attgtcaccataaacttgaaatttaacaatacaatttgaatgaagttttaa |
420 |
Q |
| |
|
||||||||| |||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
11155007 |
attgtcaccttaaacttgaaattttacaatacaatttgaatgaagttttaa |
11155057 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 380 - 421
Target Start/End: Complemental strand, 11246591 - 11246550
Alignment:
| Q |
380 |
taaacttgaaatttaacaatacaatttgaatgaagttttaac |
421 |
Q |
| |
|
|||||| ||||||| ||||||||||||||||||||||||||| |
|
|
| T |
11246591 |
taaactagaaatttcacaatacaatttgaatgaagttttaac |
11246550 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 136 - 178
Target Start/End: Complemental strand, 11212961 - 11212919
Alignment:
| Q |
136 |
atgagtaatcggtgaaaatgctcgtttgatgtggttttcgatg |
178 |
Q |
| |
|
||||||||| ||| ||||||| ||||||||||||||||||||| |
|
|
| T |
11212961 |
atgagtaattggttaaaatgcacgtttgatgtggttttcgatg |
11212919 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 136 - 178
Target Start/End: Complemental strand, 11279830 - 11279788
Alignment:
| Q |
136 |
atgagtaatcggtgaaaatgctcgtttgatgtggttttcgatg |
178 |
Q |
| |
|
||||||||| ||| ||||||| ||||||||||||||||||||| |
|
|
| T |
11279830 |
atgagtaattggttaaaatgcacgtttgatgtggttttcgatg |
11279788 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University