View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6336_low_10 (Length: 375)
Name: NF6336_low_10
Description: NF6336
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6336_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 340; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 1 - 356
Target Start/End: Complemental strand, 234380 - 234025
Alignment:
| Q |
1 |
atagctttgttagaggcacaacataacctctcattacactggtgcggttctgaattccaacaattttttgcctgatatattaatttttaaatattccaga |
100 |
Q |
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| T |
234380 |
atagctttgttagaggcacaacataacctctcattacactggtgtggttctgaattccaacaattttttgcctgatattttaatttttaaatattccaga |
234281 |
T |
|
| Q |
101 |
ggtgcgttcttgatattgggtaatgcccaggctgagattgagcaaggaaagtcttcgaatatatttgatttcatgtttaggctgagactgtgctgcaaaa |
200 |
Q |
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| T |
234280 |
ggtgcgttcttgatattgggtaatgcccaggctgagattgagcaaggaaagtcttcgaatatatctgatttcatgtttaggctgagactgtgctgcaaaa |
234181 |
T |
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| Q |
201 |
tttaatcacaagtcttcgaagtcctgtgcagcttactgcacaggggcgcaccctaagttgatccccatcgttgaagcccttgataatggttttctcaaat |
300 |
Q |
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| T |
234180 |
tttaatcacaagtcttcgaagtcctgtgcggcttactgcacaggggcgcaccctaagttgatccccatcgttgaagcccttgataatggttttctcaaat |
234081 |
T |
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| Q |
301 |
gacgtcgcatttcacatagacggttatcaatctccttgcctatataatcgtgaccc |
356 |
Q |
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| T |
234080 |
gacgtcgcatttcacatagacggttatcaatctccttgcctatataatcgtgaccc |
234025 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 73; Significance: 3e-33; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 2 - 118
Target Start/End: Original strand, 36419209 - 36419325
Alignment:
| Q |
2 |
tagctttgttagaggcacaacataacctctcattacactggtgcggttctgaattccaacaattttttgcctgatatattaatttttaaatattccagag |
101 |
Q |
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| T |
36419209 |
tagctttgttagaggcacagaataacctctcattacgttgttgtggatctgaattccaacaatttcttacctgatattttaatttttaaatattccagag |
36419308 |
T |
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| Q |
102 |
gtgcgttcttgatattg |
118 |
Q |
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|||| |||||||||||| |
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| T |
36419309 |
gtgcattcttgatattg |
36419325 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 120 - 174
Target Start/End: Original strand, 36419546 - 36419600
Alignment:
| Q |
120 |
gtaatgcccaggctgagattgagcaaggaaagtcttcgaatatatttgatttcat |
174 |
Q |
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| T |
36419546 |
gtaatgctcaggctgagattgagcaaggaaagtcttcgaatatatttgatttcat |
36419600 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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