View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6336_low_15 (Length: 306)

Name: NF6336_low_15
Description: NF6336
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6336_low_15
NF6336_low_15
[»] chr2 (1 HSPs)
chr2 (16-306)||(41351080-41351370)


Alignment Details
Target: chr2 (Bit Score: 271; Significance: 1e-151; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 16 - 306
Target Start/End: Complemental strand, 41351370 - 41351080
Alignment:
Q  16 atgaagtaaatctagggataaaataaatgatgagggggaaaaaatgcctaattaaatgctacaatccattcaactttaaaacagcaaaatcgttaaataa 115  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  41351370 atgaagaaaatctagggataaaataaatgatgagggggaaaaaatgcctaattaaatgctacaatccattcaacttaaaaacagcaaaatcgttaaataa 41351271  T
Q  116 agtaagtttctccttaaatttgagaagttacaataggaaaattccagatatgagtattaaaacaaatgatggaattatcatatcaaagatttgcctaaaa 215  Q
     ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41351270 ggtaagtttctccttaaatttgagaagttacaataggaaaatgccagatatgagtattaaaacaaatgatggaattatcatatcaaagatttgcctaaaa 41351171  T
Q  216 tacttagaagtttaataacttcaacacattaacataaataatccatatacaaaccaataagccacataaatgaagatgaaatatggttaga 306  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  41351170 tacttagaagtttaataacttcaacacattaacataaataatccatatacaaaccaataagccacataaatgaagatgaaaaatggttaga 41351080  T

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