View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6336_low_19 (Length: 287)
Name: NF6336_low_19
Description: NF6336
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6336_low_19 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 250; Significance: 1e-139; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 17 - 287
Target Start/End: Complemental strand, 234646 - 234376
Alignment:
| Q |
17 |
tacttgactatcattctaattcattttatttgaagcttggatattagaacattaaatcgtgggtacaccggtgtgcaacactttatccaaatcaccatag |
116 |
Q |
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| T |
234646 |
tacttgactatcattctaattcattttatttgaagcttggatattagaacattaaatcgtgggtacaccggtgtgcaacactttatccaaatcaccatag |
234547 |
T |
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| Q |
117 |
atttcaacaagtcttgcatttattcattttgagttcagctaaaggttttaataaatannnnnnnccatgaagtttttaaaattgattgatttttacaaac |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
234546 |
atttcaacaagtcttgcatttattcattttgagttcagctaaaggttttaataaatatttttttccatgaagtttttaaaattgattgatttttacaaac |
234447 |
T |
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| Q |
217 |
acctatgacttctagaatgtaaggattgacttgacttgaagtaccattattgctgaactgtggattatagc |
287 |
Q |
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| T |
234446 |
acctatgacttctagaatgtaaggattgacttgacttgaagtaccattattgctgaactgtggattatagc |
234376 |
T |
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Target: chr7 (Bit Score: 135; Significance: 2e-70; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 17 - 227
Target Start/End: Original strand, 36418960 - 36419173
Alignment:
| Q |
17 |
tacttgactatcattctaattcattttatttgaagcttggatattagaacattaaatcgtgggtacaccggtgtgcaacactttatccaaatcaccatag |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| ||| ||||||||||||||||||| |
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| T |
36418960 |
tacttgactatcattctaattcattttatttgaagcttggatattagaacattaaatcgtgggtacgctggtgtgcgacattttatccaaatcaccatag |
36419059 |
T |
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| Q |
117 |
atttcaacaagtcttgcatttattcattttgagttcagctaaaggttttaataa---atannnnnnnccatgaagtttttaaaattgattgatttttaca |
213 |
Q |
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||||| |||||||||||||||||||||| |||||||||||||||||||||| || | | |||||||||||| |||||||||||||||||| |
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| T |
36419060 |
atttcgacaagtcttgcatttattcattctgagttcagctaaaggttttaaaaagatttttttttttcaatgaagtttttagaattgattgatttttaca |
36419159 |
T |
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| Q |
214 |
aacacctatgactt |
227 |
Q |
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|||||||||||||| |
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| T |
36419160 |
aacacctatgactt |
36419173 |
T |
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