View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6336_low_20 (Length: 279)
Name: NF6336_low_20
Description: NF6336
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6336_low_20 |
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Alignment Details
Target: chr6 (Bit Score: 250; Significance: 1e-139; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 18 - 271
Target Start/End: Original strand, 488879 - 489132
Alignment:
| Q |
18 |
caaatggtacatattggctacaaggatgtcacatggtgcattgtgcatacaatagcttatggatgggaaatttcatccaaccagattgggatatgtttca |
117 |
Q |
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| T |
488879 |
caaatggtacatattggctacaaggatgtcacatggtgcattgtgcatacaatagcttatggatgggaaatttcatccaaccagattgggatatgtttca |
488978 |
T |
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| Q |
118 |
atctacacacccttgtgctgcttttcatgcagcttctagagccatatctggtggtccaatttacataagtgacaccgttggaaatcacaattttgacctt |
217 |
Q |
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| T |
488979 |
atctacacacccttgtgctgcttttcatgcagcttctagagccatatctggtggtccaatttacataagtgacactgttggaaatcacaattttgacctt |
489078 |
T |
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| Q |
218 |
ctcaagaaactagctttgcctgatggtaccatccttagatgtgaaacctatgct |
271 |
Q |
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| T |
489079 |
ctcaagaaactagctttgcctgatggtaccatccttagatgtgaaacctatgct |
489132 |
T |
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Target: chr3 (Bit Score: 83; Significance: 2e-39; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 18 - 180
Target Start/End: Complemental strand, 34697201 - 34697039
Alignment:
| Q |
18 |
caaatggtacatattggctacaaggatgtcacatggtgcattgtgcatacaatagcttatggatgggaaatttcatccaaccagattgggatatgtttca |
117 |
Q |
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| T |
34697201 |
caaatggtacatattggctccaaggttgtcacatggtacattgtgcctataacagtttatggatgggaaatttcattcacccagattgggacatgtttca |
34697102 |
T |
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| Q |
118 |
atctacacacccttgtgctgcttttcatgcagcttctagagccatatctggtggtccaattta |
180 |
Q |
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| T |
34697101 |
atccactcacccttgtgctgaatttcatgctgcctctagagctgtctctggtggaccaattta |
34697039 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 74; Significance: 5e-34; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 18 - 207
Target Start/End: Complemental strand, 43637955 - 43637766
Alignment:
| Q |
18 |
caaatggtacatattggctacaaggatgtcacatggtgcattgtgcatacaatagcttatggatgggaaatttcatccaaccagattgggatatgtttca |
117 |
Q |
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||||||||||||||||| | |||||||||||||||||||||||||| || || |||||||||||||||||||| || |||||||||||||| ||||| || |
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| T |
43637955 |
caaatggtacatattggttgcaaggatgtcacatggtgcattgtgcctataacagcttatggatgggaaattttatacaaccagattgggacatgttcca |
43637856 |
T |
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| Q |
118 |
atctacacacccttgtgctgcttttcatgcagcttctagagccatatctggtggtccaatttacataagtgacaccgttggaaatcacaa |
207 |
Q |
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| T |
43637855 |
atctcatcatgcttgttctgaatttcatgctgcttctcgagcaatctctggcggaccaatttatgtaagcgactctgttggaaaccacaa |
43637766 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 47 - 120
Target Start/End: Original strand, 43975962 - 43976035
Alignment:
| Q |
47 |
cacatggtgcattgtgcatacaatagcttatggatgggaaatttcatccaaccagattgggatatgtttcaatc |
120 |
Q |
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|||||| | |||||| | ||||||||||||||||||||| | | || ||||| |||||||| ||||||||||| |
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| T |
43975962 |
cacatgattcattgttcctacaatagcttatggatgggacaaatgattcaacctgattgggacatgtttcaatc |
43976035 |
T |
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