View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6336_low_25 (Length: 253)
Name: NF6336_low_25
Description: NF6336
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6336_low_25 |
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Alignment Details
Target: chr5 (Bit Score: 218; Significance: 1e-120; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 7 - 244
Target Start/End: Original strand, 28310161 - 28310398
Alignment:
| Q |
7 |
cctcttcattgtcttctcattgttggtgtaggatgcttgttagagagaaaagggtgcatttgcttttcatgttaatttgtaggttcatgaaacaaaaata |
106 |
Q |
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| T |
28310161 |
cctcttcactgtcttctcattgttggtgtaggatgcttgttagagagaaaagggtgcatttgcttttcatgttaatttgtaggttcatgaaacaaaaatt |
28310260 |
T |
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| Q |
107 |
aaagtaatatgtctagtactttagttggatttctaagaaagagattgtactcaaattaactagatatattttagtgttttatctcatattacttaatttt |
206 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
28310261 |
aaagtaatatgtctagtactttagttggatttctaagaaagagattgtactcaaattaactagatatattttagtattttatctcatattacttaatttt |
28310360 |
T |
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| Q |
207 |
aatttttgttgaagacaatatttaccttatgttcatct |
244 |
Q |
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| T |
28310361 |
aatttctgttgaagacaatatttaccttacgttcatct |
28310398 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 7 - 242
Target Start/End: Original strand, 28305176 - 28305409
Alignment:
| Q |
7 |
cctcttcattgtcttctcattgttggtgtaggatgcttgttagagagaaaagggtgcatttgcttttcatgttaatttgtaggttcatgaaacaaaaata |
106 |
Q |
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||||||| |||||| |||||||||||||| |||| ||||||||| || | |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28305176 |
cctcttctatgtcttttcattgttggtgtatgatgattgttagagcataa--gttgcatttgcttttcatgttaatttgtaggttcatgaaacaaaaata |
28305273 |
T |
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| Q |
107 |
aaagtaatatgtctagtactttagttggatttctaagaaagagattgtactcaaattaactagatatattttagtgttttatctcatattacttaatttt |
206 |
Q |
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|||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||| |
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| T |
28305274 |
aaagtaatatgtctagtactttagttagttttctaagaaagagattgtactcaaattaactttaactattttagtgttttatctcatattacttaatttt |
28305373 |
T |
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| Q |
207 |
aatttttgttgaagacaatatttaccttatgttcat |
242 |
Q |
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| T |
28305374 |
aatttatgttaaagacaatatttaccttatgttcat |
28305409 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 80; Significance: 1e-37; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 133 - 244
Target Start/End: Complemental strand, 19796109 - 19796000
Alignment:
| Q |
133 |
ggatttctaagaaagagattgtactcaaattaactagatatattttagtgttttatctcatattacttaattttaatttttgttgaagacaatatttacc |
232 |
Q |
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||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||| |
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| T |
19796109 |
ggatttctaagaaagagattgtactcaaattaacttgatcg-ttttagtgttttatctcatattacttaattttaatttctgtt-aagacaatatttacc |
19796012 |
T |
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| Q |
233 |
ttatgttcatct |
244 |
Q |
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|||||||||||| |
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| T |
19796011 |
ttatgttcatct |
19796000 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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