View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6336_low_28 (Length: 242)
Name: NF6336_low_28
Description: NF6336
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6336_low_28 |
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Alignment Details
Target: chr7 (Bit Score: 216; Significance: 1e-119; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 9 - 224
Target Start/End: Original strand, 46893531 - 46893746
Alignment:
| Q |
9 |
acatcatcatattttcttccaattgacgacttccaatagtaatagcagctttaggatgcaacccaccattcacaaatgccaaacaagaaaccccatttcg |
108 |
Q |
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| T |
46893531 |
acatcatcatattttcttccaattgacgacttccaatagtaatagcagctttaggatgcaacccaccattcacaaatgccaaacaagaaaccccatttcg |
46893630 |
T |
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| Q |
109 |
tggctgcaccatcaagttttcaccagagattctccaaacaacatcaggcctatccatcacaaactcaacactaagagcttggttaatccttttggaatca |
208 |
Q |
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| T |
46893631 |
tggctgcaccatcaagttttcaccagagattctccaaacaacatcaggcctatccatcacaaactcaacactaagagcttggttaatccttttggaatca |
46893730 |
T |
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| Q |
209 |
aaacacataccaaacg |
224 |
Q |
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| T |
46893731 |
aaacacataccaaacg |
46893746 |
T |
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Target: chr6 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 57 - 142
Target Start/End: Original strand, 3063789 - 3063874
Alignment:
| Q |
57 |
ctttaggatgcaacccaccattcacaaatgccaaacaagaaaccccatttcgtggctgcaccatcaagttttcaccagagattctc |
142 |
Q |
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| T |
3063789 |
ctttagaatacaaccaaccatccacgaatcccaaacaagaaatctcattatatggctgcaccatcaagttttcaccatagattctc |
3063874 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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