View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6336_low_29 (Length: 241)
Name: NF6336_low_29
Description: NF6336
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6336_low_29 |
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Alignment Details
Target: chr2 (Bit Score: 134; Significance: 7e-70; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 67 - 224
Target Start/End: Complemental strand, 34618871 - 34618715
Alignment:
| Q |
67 |
tttccctcaccctctctctaaatgtatttatccaaagccaacagagaggtcaaaaagccaacaatttgacttgatattgagattcctatgttttattttt |
166 |
Q |
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| T |
34618871 |
tttccctcaccctctctctaaatgtatttatccaaaggcaacagagaggtcaaaaa-ccaacaatttgacttgatattgagattcctatgttttatttgt |
34618773 |
T |
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| Q |
167 |
tgtttcgattgttcagcatatggattctacgcagtctacaaatagatttgtgaaacaa |
224 |
Q |
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| T |
34618772 |
tgtttcgattgttcaacatatggattctacacagtctacaaatagatttgtgaaacaa |
34618715 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 90; Significance: 1e-43; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 8 - 225
Target Start/End: Complemental strand, 47667854 - 47667636
Alignment:
| Q |
8 |
ttttaaataatttacatgttagcccatactgtcttttctcacgcaagctcaagtcactttttccctcaccc-------tctctctaaatgtatttatcca |
100 |
Q |
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|||||||||||||||||||| | |||||||||||||||||||||||| |||| |||||||||||||||||| ||||| ||||||||||||| || |
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| T |
47667854 |
ttttaaataatttacatgttggtccatactgtcttttctcacgcaagttcaactcactttttccctcaccctctcctctctctttaaatgtatttattca |
47667755 |
T |
|
| Q |
101 |
aagccaacagagaggtcaaaaagccaacaatttgacttgatattgagattcctatgttttattttttgtttcgattgttcagcatatggattctacgcag |
200 |
Q |
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| T |
47667754 |
a----gagagagaggtc-aaaagccaacagtttaacttgatattgaaatttgtatgttttatttgttgtttcagttgttca-catatggattctacatag |
47667661 |
T |
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| Q |
201 |
tctacaaatagatttgtgaaacaac |
225 |
Q |
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| T |
47667660 |
tctacagatagatttgtgaaacaac |
47667636 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 80; Significance: 1e-37; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 8 - 225
Target Start/End: Original strand, 34709421 - 34709652
Alignment:
| Q |
8 |
ttttaaataatttacatgttagcccatactgtcttttctcacgcaagctcaagt-cactttttccct-caccctctc-------tctaaatgtatttatc |
98 |
Q |
| |
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||||||||||||||||||||||||||| || ||||||||||| ||||||||| | || ||||||||| ||||||||| | |||||||||||||| |
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| T |
34709421 |
ttttaaataatttacatgttagcccatcctatcttttctcacacaagctcaacttcattttttcccttcaccctctcctctctctttaaatgtatttatc |
34709520 |
T |
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| Q |
99 |
caaagccaacaga------gaggtcaaaaagccaacaatttgacttgatattgagattcctatgttttattttttgtttcgattgttcagcatatggatt |
192 |
Q |
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||| ||||||||| |||||||||| ||||||| |||||||||||||||||||| |||||||||||| ||||||| |||||||||| |||||||| |
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| T |
34709521 |
caacgccaacagacaaagagaggtcaaaa-gccaacagtttgacttgatattgagatttgtatgttttatttgttgtttcaattgttcagcgtatggatt |
34709619 |
T |
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| Q |
193 |
ctacgcagtctacaaatagatttgtgaaacaac |
225 |
Q |
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||| | | ||| |||||||||||||||||| |
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| T |
34709620 |
ctatataatttacggatagatttgtgaaacaac |
34709652 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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