View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6336_low_33 (Length: 235)
Name: NF6336_low_33
Description: NF6336
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6336_low_33 |
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Alignment Details
Target: chr6 (Bit Score: 123; Significance: 3e-63; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 93 - 223
Target Start/End: Original strand, 22879313 - 22879443
Alignment:
| Q |
93 |
aacccaaaaggaaacaataagacagtaatgtaacagaagattttaacaaaattatgacctaaacttctaaattctatcaggcttcaattaactcataatt |
192 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
22879313 |
aacccaaaaggagacaataagacagtaatgtaacagaagattttaacaaaattatgacctaaacttctaaatactatcaggcttcaattaactcataatt |
22879412 |
T |
|
| Q |
193 |
ctcacaaaatcaatatcataatatgattaat |
223 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
22879413 |
ctcacaaaatcaatatcataatatgattaat |
22879443 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 93 - 223
Target Start/End: Original strand, 22897433 - 22897563
Alignment:
| Q |
93 |
aacccaaaaggaaacaataagacagtaatgtaacagaagattttaacaaaattatgacctaaacttctaaattctatcaggcttcaattaactcataatt |
192 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
22897433 |
aacccaaaaggagacaataagacagtaatgtaacagaagattttaacaaaattatgacctaaacttctaaatactatcaggcttcaattaactcataatt |
22897532 |
T |
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| Q |
193 |
ctcacaaaatcaatatcataatatgattaat |
223 |
Q |
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||||||||||||||||||||||||||||||| |
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|
| T |
22897533 |
ctcacaaaatcaatatcataatatgattaat |
22897563 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 22879252 - 22879346
Alignment:
| Q |
1 |
cccaaccccatttgtagatcccatcaaatgcaaccaacaacataagatcttaataggcaacaacccaaaaggagacaataagacagtaatgtaac |
95 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22879252 |
cccaaccccatttgtagatcccatcaaatgcaaccaacaacataagatcttaataggcaacaacccaaaaggagacaataagacagtaatgtaac |
22879346 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 22897372 - 22897466
Alignment:
| Q |
1 |
cccaaccccatttgtagatcccatcaaatgcaaccaacaacataagatcttaataggcaacaacccaaaaggagacaataagacagtaatgtaac |
95 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22897372 |
cccaaccccatttgtagatcccatcaaatgcaaccaacaacataagatcttaataggcaacaacccaaaaggagacaataagacagtaatgtaac |
22897466 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 96; Significance: 3e-47; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 93 - 212
Target Start/End: Original strand, 198185 - 198304
Alignment:
| Q |
93 |
aacccaaaaggaaacaataagacagtaatgtaacagaagattttaacaaaattatgacctaaacttctaaattctatcaggcttcaattaactcataatt |
192 |
Q |
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|
||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| |||||||||| ||||||| |
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| T |
198185 |
aacccaaaaggcaacaataagacagtaatgtaatagaagattttaacaaaattatgacctaaacttctaaatactatcaggtttcaattaacccataatt |
198284 |
T |
|
| Q |
193 |
ctcacaaaatcaatatcata |
212 |
Q |
| |
|
|||||||||||| ||||||| |
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|
| T |
198285 |
ctcacaaaatcagtatcata |
198304 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 4 - 94
Target Start/End: Original strand, 198127 - 198217
Alignment:
| Q |
4 |
aaccccatttgtagatcccatcaaatgcaaccaacaacataagatcttaataggcaacaacccaaaaggagacaataagacagtaatgtaa |
94 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||| |||||||||| ||||||||||||||| |||||||||||||||||||| |
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| T |
198127 |
aaccccatttgtagatcccatcaaatgcaatcaacaacataacatcttaatagacaacaacccaaaaggcaacaataagacagtaatgtaa |
198217 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 83; Significance: 2e-39; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 93 - 211
Target Start/End: Original strand, 17229540 - 17229658
Alignment:
| Q |
93 |
aacccaaaaggaaacaataagacagtaatgtaacagaagattttaacaaaattatgacctaaacttctaaattctatcaggcttcaattaactcataatt |
192 |
Q |
| |
|
||||||||||| |||||||||||| |||||||||||||||||||||||||||||||| |||||||||||| | |||| ||| |||||||||| ||||||| |
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| T |
17229540 |
aacccaaaaggcaacaataagacaataatgtaacagaagattttaacaaaattatgagctaaacttctaattactattaggtttcaattaacccataatt |
17229639 |
T |
|
| Q |
193 |
ctcacaaaatcaatatcat |
211 |
Q |
| |
|
|||||||||||| |||||| |
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|
| T |
17229640 |
ctcacaaaatcagtatcat |
17229658 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 17229479 - 17229573
Alignment:
| Q |
1 |
cccaaccccatttgtagatcccatcaaatgcaaccaacaacataagatcttaataggcaacaacccaaaaggagacaataagacagtaatgtaac |
95 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||| ||||||||||| ||||||||| |
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| T |
17229479 |
cccaaccccatttgtagatcccatcaaatgcaaccaacaacataacatcttaatagacaacaacccaaaaggcaacaataagacaataatgtaac |
17229573 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 75; Significance: 1e-34; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 19537697 - 19537791
Alignment:
| Q |
1 |
cccaaccccatttgtagatcccatcaaatgcaaccaacaacataagatcttaataggcaacaacccaaaaggagacaataagacagtaatgtaac |
95 |
Q |
| |
|
||||||| |||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||| |
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|
| T |
19537697 |
cccaacctcatttgtagatctcatcaaatgcaaccaacaacataaaatcttaataggcaacaacccaaaaggcaacaataagacagtaatgtaac |
19537791 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 93 - 145
Target Start/End: Original strand, 19537758 - 19537810
Alignment:
| Q |
93 |
aacccaaaaggaaacaataagacagtaatgtaacagaagattttaacaaaatt |
145 |
Q |
| |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
19537758 |
aacccaaaaggcaacaataagacagtaatgtaacagaagattttaacaaaatt |
19537810 |
T |
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