View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6336_low_5 (Length: 454)
Name: NF6336_low_5
Description: NF6336
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6336_low_5 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 416; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 416; E-Value: 0
Query Start/End: Original strand, 19 - 454
Target Start/End: Complemental strand, 31459775 - 31459340
Alignment:
| Q |
19 |
agtctggaataggaccagtgattaagcaatttctcaattccctgagttaccgcaatgaaccagttaataaatcataaatgagttacacaattcttcatat |
118 |
Q |
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| T |
31459775 |
agtctggaataggaccagtgattaagcaatttctcaattccctgagttaccgcaataaaccagttaataaatcataaatgagttacacaattcttcatat |
31459676 |
T |
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| Q |
119 |
gtaggcaggaagaaaaggtttcaagttttccactcacagtctttgcatgcgtttcaaatccttcaaatcgggaaatgtcatcgttgtgtttcccttcaag |
218 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31459675 |
gtaggcaggaagaagaggtttcaagttttccactcacagtctttgcatgcgtttcaaatccttcaaatcgggaaatgtcatcgttgtgtttcccttcaag |
31459576 |
T |
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| Q |
219 |
tcagatattctcctgataaataaatgtttcatcagtaaaaagaaaatgttcccctattgaacaatgcatttcataaccattgtgaaatgcagacgaaata |
318 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31459575 |
tcagatatcctcctgataaataaatgtttcatcagtaaaaagaaaatgttcccctattgaacaatgcatttcataaccattgtgaaatgcagacgaaata |
31459476 |
T |
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| Q |
319 |
caacaagtagaaacattggtcgatattcaaagaaaaatttatgaatcatcgataaactactggtaaatatatgacactattaagtaaaagtaattggcaa |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31459475 |
caacaagtagaaacattggtcgatattcaaagaaaaatttatgaatcatcgatacactactggtaaatatatgacactattaagtaaaagtaattggcaa |
31459376 |
T |
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| Q |
419 |
agaaaaattattagctgctatttcatctactagcct |
454 |
Q |
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| T |
31459375 |
agaaaaattataagctgctatttcatctactagcct |
31459340 |
T |
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Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 24 - 63
Target Start/End: Complemental strand, 20059103 - 20059064
Alignment:
| Q |
24 |
ggaataggaccagtgattaagcaatttctcaattccctga |
63 |
Q |
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| T |
20059103 |
ggaataggacctgtgattaagcaatttctcaactccctga |
20059064 |
T |
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