View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6336_low_7 (Length: 402)

Name: NF6336_low_7
Description: NF6336
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6336_low_7
NF6336_low_7
[»] chr7 (7 HSPs)
chr7 (16-394)||(24865316-24865698)
chr7 (84-244)||(4031424-4031584)
chr7 (84-207)||(8259357-8259480)
chr7 (143-205)||(11609117-11609179)
chr7 (312-394)||(23022445-23022527)
chr7 (349-389)||(5265515-5265555)
chr7 (349-388)||(1783251-1783290)
[»] chr3 (7 HSPs)
chr3 (84-389)||(27405771-27406070)
chr3 (84-246)||(17034412-17034573)
chr3 (84-205)||(24112594-24112715)
chr3 (90-207)||(5638714-5638830)
chr3 (84-172)||(8109701-8109789)
chr3 (139-205)||(4252980-4253046)
chr3 (84-161)||(11043341-11043418)
[»] chr1 (11 HSPs)
chr1 (84-203)||(34187892-34188011)
chr1 (86-243)||(16637038-16637200)
chr1 (84-256)||(14580603-14580775)
chr1 (88-208)||(31584315-31584435)
chr1 (83-205)||(41029270-41029392)
chr1 (88-172)||(15440685-15440769)
chr1 (84-207)||(25791453-25791576)
chr1 (119-205)||(19362030-19362116)
chr1 (119-205)||(19380670-19380756)
chr1 (138-205)||(43282446-43282513)
chr1 (145-193)||(17088083-17088131)
[»] chr6 (7 HSPs)
chr6 (90-218)||(11130845-11130973)
chr6 (84-253)||(29031973-29032142)
chr6 (84-205)||(6560996-6561118)
chr6 (138-205)||(15586568-15586635)
chr6 (156-244)||(17291610-17291698)
chr6 (312-389)||(17291733-17291810)
chr6 (349-389)||(4312639-4312679)
[»] chr8 (6 HSPs)
chr8 (84-209)||(7321417-7321542)
chr8 (84-205)||(28800817-28800939)
chr8 (84-205)||(29757546-29757667)
chr8 (84-243)||(19008187-19008346)
chr8 (85-205)||(29771696-29771816)
chr8 (90-207)||(18528084-18528201)
[»] scaffold0804 (1 HSPs)
scaffold0804 (84-256)||(320-492)
[»] chr2 (5 HSPs)
chr2 (84-198)||(22268673-22268787)
chr2 (84-262)||(13073644-13073821)
chr2 (89-218)||(17569517-17569646)
chr2 (321-389)||(13073872-13073940)
chr2 (83-203)||(23959379-23959499)
[»] chr5 (9 HSPs)
chr5 (84-205)||(20690081-20690200)
chr5 (283-389)||(25936070-25936175)
chr5 (84-173)||(31730529-31730618)
chr5 (90-200)||(17338073-17338183)
chr5 (84-197)||(19692468-19692581)
chr5 (138-208)||(6038015-6038085)
chr5 (84-132)||(19642079-19642127)
chr5 (84-162)||(25936263-25936341)
chr5 (349-394)||(25604580-25604625)
[»] chr4 (2 HSPs)
chr4 (85-205)||(20245356-20245476)
chr4 (339-388)||(11545446-11545495)


Alignment Details
Target: chr7 (Bit Score: 301; Significance: 1e-169; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 16 - 394
Target Start/End: Original strand, 24865316 - 24865698
Alignment:
Q  16 tcactcgttgcatgatttatgtgattatatctgcatnnnnnnnn--ttatatacatatataacaaagtctatatggttaatgtcgtttgaagagacattc 113  Q
    |||||||||||||||| |||||||||||||||||||          ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24865316 tcactcgttgcatgatatatgtgattatatctgcataaaaaaaaaattatatacatatataacaaagtctatatggttaatgtcgtttgaagagacattc 24865415  T
Q  114 aaaatccattgttgcaaataaaagtatctgtttcattccttttgtccttgaatttgactacccacgcgattcagaagaagacaaattgtactatctagaa 213  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24865416 aaaatccattgttgcaaataaaagtatttgtttcattccttttgtccttgaatttgactacccacgcgattcagaagaagacaaattgtactatctagaa 24865515  T
Q  214 gtgacccttctcagaataagataaagatgacaaggcttctaggcccctcctcaaagtctggattgacac--agtttgactgacttagaacctgattatcg 311  Q
    ||||||||||||||||||||| ||||||||||||||||| |||  ||||||||||||||||||||||||  ||||||| |||||||||||||||||||||    
T  24865516 gtgacccttctcagaataagacaaagatgacaaggcttccaggtacctcctcaaagtctggattgacacagagtttgagtgacttagaacctgattatcg 24865615  T
Q  312 agagtctggtcttcactagcttctaggtgactttttctcttctgatccaaagtattgacttctgattgacctttcttcttatc 394  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  24865616 agagtctagtcttcactagcttctaggtgactttttctcttctgatccaaagtattgacttctgattgacctttcttcatatc 24865698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 84 - 244
Target Start/End: Complemental strand, 4031584 - 4031424
Alignment:
Q  84 atatggttaatgtcgtttgaagagacattcaaaatccattgttgcaaataaaagtatctgtttcattccttttgtccttgaatttgactacccacgcgat 183  Q
    |||||||||||||| ||||||||||||||| |||||||||| ||||||||||| ||| |||||||||| |||||||||||||||||||||  |||| |||    
T  4031584 atatggttaatgtcttttgaagagacattcgaaatccattgctgcaaataaaattatttgtttcattcattttgtccttgaatttgactaaacacgtgat 4031485  T
Q  184 tcagaagaagacaaattgtactatctagaagtgacccttctcagaataagataaagatgac 244  Q
    ||||||||||| |||||||||| ||| ||||||||||||||||||| |||| |||||||||    
T  4031484 tcagaagaagataaattgtactgtcttgaagtgacccttctcagaagaagacaaagatgac 4031424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 84 - 207
Target Start/End: Original strand, 8259357 - 8259480
Alignment:
Q  84 atatggttaatgtcgtttgaagagacattcaaaatccattgttgcaaataaaagtatctgtttcattccttttgtccttgaatttgactacccacgcgat 183  Q
    ||||||||||||||||||||| |||||||| |||||||||| |||||||| || ||| ||||||||||| ||| || ||||||||||||   |||  |||    
T  8259357 atatggttaatgtcgtttgaaaagacattcgaaatccattgctgcaaatagaattatttgtttcattccatttttcgttgaatttgacttggcacatgat 8259456  T
Q  184 tcagaagaagacaaattgtactat 207  Q
    ||||||||||||||||| ||||||    
T  8259457 tcagaagaagacaaattatactat 8259480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 143 - 205
Target Start/End: Complemental strand, 11609179 - 11609117
Alignment:
Q  143 gtttcattccttttgtccttgaatttgactacccacgcgattcagaagaagacaaattgtact 205  Q
    ||||||||||||||||||||||||||||||   |||  |||| ||||||||||||||||||||    
T  11609179 gtttcattccttttgtccttgaatttgacttaacacatgatttagaagaagacaaattgtact 11609117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 312 - 394
Target Start/End: Complemental strand, 23022527 - 23022445
Alignment:
Q  312 agagtctggtcttcactagcttctaggtgactttttctcttctgatccaaagtattgacttctgattgacctttcttcttatc 394  Q
    |||||||||| |||| |  ||| | |||||||| ||||||||||||||||||| |||||||||  ||||||||||||| ||||    
T  23022527 agagtctggtattcaattacttttgggtgacttcttctcttctgatccaaagttttgacttctagttgacctttcttcatatc 23022445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 349 - 389
Target Start/End: Original strand, 5265515 - 5265555
Alignment:
Q  349 tcttctgatccaaagtattgacttctgattgacctttcttc 389  Q
    |||||| |||||| |||||||||||||||||||||||||||    
T  5265515 tcttctaatccaatgtattgacttctgattgacctttcttc 5265555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 349 - 388
Target Start/End: Original strand, 1783251 - 1783290
Alignment:
Q  349 tcttctgatccaaagtattgacttctgattgacctttctt 388  Q
    |||||||||||||  |||||||||||||||||||||||||    
T  1783251 tcttctgatccaacatattgacttctgattgacctttctt 1783290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 77; Significance: 1e-35; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 84 - 389
Target Start/End: Complemental strand, 27406070 - 27405771
Alignment:
Q  84 atatggttaatgtcgtttgaagagacattcaaaatccattgttgcaaataaaagtatctgtttcattccttttgtccttgaatttgactacccacgcgat 183  Q
    ||||||| |||||||||||||||||||||| ||| |||||  |||||||| || ||||||||||||| | ||||||||||||||||||||  ||   |||    
T  27406070 atatggtgaatgtcgtttgaagagacattcgaaagccatttctgcaaatagaattatctgtttcatt-catttgtccttgaatttgactaatcatatgat 27405972  T
Q  184 tcagaagaagacaaattgtactatctagaagtgacccttctcagaataagataaagatgacaaggcttctaggcccctcctcaaagtctggattgacaca 283  Q
    | |||||||||||||||||||||| |  |||||||| ||||||||| |||| ||||||||| |||||||| || |   ||||| ||| |||| || || |    
T  27405971 ttagaagaagacaaattgtactat-tgaaagtgaccattctcagaagaagacaaagatgactaggcttctgggtc---cctcagagtttgga-tgtcata 27405877  T
Q  284 gtttgactgacttagaacctg-attatcgagagtctggtcttcactagcttctaggtgactttttctcttctgatccaaagtattgacttctgattgacc 382  Q
    || ||| || | ||||  ||| |||||| ||  ||||||| |||||||||| | |||||||| ||||| ||||||||||||| ||||||| || || ||     
T  27405876 gtctgagtgtcgtagagtctgaattatccaggatctggtc-tcactagcttttgggtgacttcttctcatctgatccaaagtgttgacttatggttaact 27405778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 84 - 246
Target Start/End: Complemental strand, 17034573 - 17034412
Alignment:
Q  84 atatggttaatgtcgtttgaagagacattcaaaatccattgttgcaaataaaagtatctgtttcattccttttgtccttgaatttgactacccacgcgat 183  Q
    ||||||||||||||||| | ||||| ||||||||| ||||| ||||| || || |||||||||||||||||||||| ||||||||||| |  |||| |||    
T  17034573 atatggttaatgtcgttggtagagatattcaaaattcattgctgcaagtagaattatctgtttcattccttttgtctttgaatttgaccaagcacgtgat 17034474  T
Q  184 tcagaagaagacaaattgtactatctagaagtgacccttctcagaataagataaagatgacaa 246  Q
    | ||||||||| ||||||||||| ||  |||||||||||||||||| |||| |||| ||||||    
T  17034473 ttagaagaagataaattgtacta-ctgaaagtgacccttctcagaagaagacaaagctgacaa 17034412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 84 - 205
Target Start/End: Original strand, 24112594 - 24112715
Alignment:
Q  84 atatggttaatgtcgtttgaagagacattcaaaatccatt-gttgcaaataaaagtatctgtttcattccttttgtccttgaatttgactacccacgcga 182  Q
    ||||||||||||||||| ||| ||||||||||||| |||| | ||||| |  || ||||  ||| |||||||||||||||||||||||||   |||| ||    
T  24112594 atatggttaatgtcgtt-gaaaagacattcaaaattcatttgctgcaattggaaatatccattttattccttttgtccttgaatttgacttagcacgtga 24112692  T
Q  183 ttcagaagaagacaaattgtact 205  Q
    | |||||||||||||||||||||    
T  24112693 tccagaagaagacaaattgtact 24112715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 90 - 207
Target Start/End: Complemental strand, 5638830 - 5638714
Alignment:
Q  90 ttaatgtcgtttgaagagacattcaaaatccattgttgcaaataaaagtatctgtttcattccttttgtccttgaatttgactacccacgcgattcagaa 189  Q
    |||||||||||||||  ||||||  |||  ||||  ||||||||  | ||||| |||||||||||| ||||||||||||||||   || | |||||| ||    
T  5638830 ttaatgtcgtttgaaatgacatttgaaaatcatttctgcaaataggattatctatttcattccttt-gtccttgaatttgacttagcatgtgattcataa 5638732  T
Q  190 gaagacaaattgtactat 207  Q
    ||||||||| ||||||||    
T  5638731 gaagacaaactgtactat 5638714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 84 - 172
Target Start/End: Original strand, 8109701 - 8109789
Alignment:
Q  84 atatggttaatgtcgtttgaagagacattcaaaatccattgttgcaaataaaagtatctgtttcattccttttgtccttgaatttgact 172  Q
    |||||||||||| | |||||| |||||||  |||||||||  |||||||| || |||| ||||||||| ||||| | ||||||| ||||    
T  8109701 atatggttaatgccatttgaaaagacatttgaaatccattcctgcaaatataattatccgtttcattctttttgacattgaattcgact 8109789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 139 - 205
Target Start/End: Original strand, 4252980 - 4253046
Alignment:
Q  139 atctgtttcattccttttgtccttgaatttgactacccacgcgattcagaagaagacaaattgtact 205  Q
    ||||||||||||||||||||| ||||||||||||   || | |||  |||| |||||||||||||||    
T  4252980 atctgtttcattccttttgtcattgaatttgacttagcatgtgatctagaataagacaaattgtact 4253046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 84 - 161
Target Start/End: Original strand, 11043341 - 11043418
Alignment:
Q  84 atatggttaatgtcgtttgaagagacattcaaaatccattgttgcaaataaaagtatctgtttcattccttttgtcct 161  Q
    ||||||||||||||||||||| ||||||||||| | ||||| | || ||| || |||  ||||||||| | |||||||    
T  11043341 atatggttaatgtcgtttgaaaagacattcaaagttcattgcttcagatataattataagtttcattcatgttgtcct 11043418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 76; Significance: 5e-35; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 84 - 203
Target Start/End: Original strand, 34187892 - 34188011
Alignment:
Q  84 atatggttaatgtcgtttgaagagacattcaaaatccattgttgcaaataaaagtatctgtttcattccttttgtccttgaatttgactacccacgcgat 183  Q
    |||| |||||||||||||||| ||||||||||||| ||||| ||||| || || |||||||||||||||||||||||||||||||||||   |||| |||    
T  34187892 atatagttaatgtcgtttgaaaagacattcaaaattcattgctgcaattagaattatctgtttcattccttttgtccttgaatttgacttagcacgtgat 34187991  T
Q  184 tcagaagaagacaaattgta 203  Q
    ||||||||||||||||||||    
T  34187992 tcagaagaagacaaattgta 34188011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 86 - 243
Target Start/End: Original strand, 16637038 - 16637200
Alignment:
Q  86 atggttaatgtcgtttgaagagacattcaaaatccattgttgcaaataaaagtatctgtttcattccttttgtccttgaatttgactacccacgcgattc 185  Q
    ||||||||||||||||||| |||||||  |||||||||| |||||||| || |||  |||||||||  ||||||||||||||||||||  |||| | |||    
T  16637038 atggttaatgtcgtttgaaaagacatttgaaatccattgctgcaaatagaattattcgtttcattcagtttgtccttgaatttgactaaacacgtggttc 16637137  T
Q  186 agaag-aagacaaattgta----ctatctagaagtgacccttctcagaataagataaagatga 243  Q
    | ||| |||||||||||||    ||||||  |||||||||||||||||| |||||||||||||    
T  16637138 aaaagaaagacaaattgtactagctatctgaaagtgacccttctcagaagaagataaagatga 16637200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 84 - 256
Target Start/End: Complemental strand, 14580775 - 14580603
Alignment:
Q  84 atatggttaatgtcgtttgaagagacattcaaaatccattgttgcaaataaaagtatc-tgtttcattccttttgtccttgaatttgactacccacgcga 182  Q
    |||||||||| ||||||||||| ||||||| ||||||||||  | ||||| || |||| | |||||||| |||||||||||||||||||||  |||| ||    
T  14580775 atatggttaacgtcgtttgaagggacattcgaaatccattgacggaaatagaattatcctttttcattctttttgtccttgaatttgactaagcacgtga 14580676  T
Q  183 ttcagaagaagacaaattgtactatctagaagtgacccttctcagaataagataaagatgacaaggcttctagg 256  Q
    |  |||||||||||||||||||||| |  ||||| | ||||||| || |||| ||| ||||| |||||||||||    
T  14580675 tcgagaagaagacaaattgtactat-tgaaagtggctcttctcataagaagacaaatatgactaggcttctagg 14580603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 88 - 208
Target Start/End: Complemental strand, 31584435 - 31584315
Alignment:
Q  88 ggttaatgtcgtttgaagagacattcaaaatccattgttgcaaataaaagtatctgtttcattccttttgtccttgaatttgactacccacgcgattcag 187  Q
    ||||||||||||| ||| |||||||| ||||| |||| |||||||| ||  ||| |||||||| | |||| ||||||||||||||   || | |||||||    
T  31584435 ggttaatgtcgttcgaaaagacattcgaaatctattgctgcaaatagaatcatccgtttcatttcatttgcccttgaatttgacttaacatgtgattcag 31584336  T
Q  188 aagaagacaaattgtactatc 208  Q
    |||||||||||||||||||||    
T  31584335 aagaagacaaattgtactatc 31584315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 83 - 205
Target Start/End: Original strand, 41029270 - 41029392
Alignment:
Q  83 tatatggttaatgtcgtttgaagagacattcaaaatccattgttgcaaataaaagtatctgtttcattccttttgtccttgaatttgactacccacgcga 182  Q
    |||||||||||||||||||||| |||||||  |||||||||| |||||||| || ||||  ||| ||||| ||| | |||||||||||||   |||| ||    
T  41029270 tatatggttaatgtcgtttgaaaagacatttcaaatccattgctgcaaatagaattatccattttattccctttattcttgaatttgacttagcacgtga 41029369  T
Q  183 ttcagaagaagacaaattgtact 205  Q
    || ||||||| ||||||||||||    
T  41029370 tttagaagaaaacaaattgtact 41029392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 88 - 172
Target Start/End: Original strand, 15440685 - 15440769
Alignment:
Q  88 ggttaatgtcgtttgaagagacattcaaaatccattgttgcaaataaaagtatctgtttcattccttttgtccttgaatttgact 172  Q
    |||| ||||| |||||| |||||| | || ||||||| |||||||| || |||||||||||||| ||||||||||||||||||||    
T  15440685 ggttgatgtcttttgaaaagacataccaagtccattgctgcaaatagaattatctgtttcattcgttttgtccttgaatttgact 15440769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 84 - 207
Target Start/End: Complemental strand, 25791576 - 25791453
Alignment:
Q  84 atatggttaatgtcgtttgaagagacattcaaaatccattgttgcaaataaaagtatctgtttcattccttttgtccttgaatttgactacccacgcgat 183  Q
    ||||| ||||||| ||||||| |||||||| ||||| |||   ||||||| || |||  ||| ||||||||||||  ||||||||||||   |||| |||    
T  25791576 atatgattaatgttgtttgaaaagacattcgaaatctattacagcaaatagaattattggttccattccttttgttattgaatttgacttagcacgtgat 25791477  T
Q  184 tcagaagaagacaaattgtactat 207  Q
    ||||||||| ||||| ||||||||    
T  25791476 tcagaagaaaacaaactgtactat 25791453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 119 - 205
Target Start/End: Complemental strand, 19362116 - 19362030
Alignment:
Q  119 ccattgttgcaaataaaagtatctgtttcattccttttgtccttgaatttgactacccacgcgattcagaagaagacaaattgtact 205  Q
    |||||| ||||| || || |||| |||||||| |||||||||||||||||||||   |||  |||||| ||||||||||| ||||||    
T  19362116 ccattgctgcaattagaattatccgtttcatttcttttgtccttgaatttgacttaacacatgattcaaaagaagacaaaatgtact 19362030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 119 - 205
Target Start/End: Complemental strand, 19380756 - 19380670
Alignment:
Q  119 ccattgttgcaaataaaagtatctgtttcattccttttgtccttgaatttgactacccacgcgattcagaagaagacaaattgtact 205  Q
    |||||| ||||| || || |||| |||||||| |||||||||||||||||||||   |||  |||||| ||||||||||| ||||||    
T  19380756 ccattgctgcaattagaattatccgtttcatttcttttgtccttgaatttgacttaacacatgattcaaaagaagacaaaatgtact 19380670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 138 - 205
Target Start/End: Complemental strand, 43282513 - 43282446
Alignment:
Q  138 tatctgtttcattccttttgtccttgaatttgactacccacgcgattcagaagaagacaaattgtact 205  Q
    ||||| |||||||||||||| |||||||||| |||   |||| |||||| ||||||||||| ||||||    
T  43282513 tatctttttcattccttttgcccttgaatttaacttagcacgtgattcataagaagacaaaatgtact 43282446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 145 - 193
Target Start/End: Complemental strand, 17088131 - 17088083
Alignment:
Q  145 ttcattccttttgtccttgaatttgactacccacgcgattcagaagaag 193  Q
    |||||||||||||||||||||||| |||   |||| |||||||||||||    
T  17088131 ttcattccttttgtccttgaatttaacttagcacgtgattcagaagaag 17088083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 69; Significance: 7e-31; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 90 - 218
Target Start/End: Original strand, 11130845 - 11130973
Alignment:
Q  90 ttaatgtcgtttgaagagacattcaaaatccattgttgcaaataaaagtatctgtttcattccttttgtccttgaatttgactacccacgcgattcagaa 189  Q
    ||||||||||||| | |||||||||||||| |||| |||||||| || |||   |||||||||||||||||||||||||||||   |||| |||||||||    
T  11130845 ttaatgtcgtttggaaagacattcaaaatctattgatgcaaatagaattatacatttcattccttttgtccttgaatttgacttagcacgtgattcagaa 11130944  T
Q  190 gaagacaaattgtactatctagaagtgac 218  Q
    ||||||||||||||||||||  |||||||    
T  11130945 gaagacaaattgtactatctgaaagtgac 11130973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 84 - 253
Target Start/End: Original strand, 29031973 - 29032142
Alignment:
Q  84 atatggttaatgtcgtttgaagagacattcaaaatccattgttgcaaataaaagtatctgtttcattccttttgtccttgaatttgactacccacgcgat 183  Q
    ||||||||||||| |||||||||||||||  ||||||||| | |||  || || ||||| ||| ||||||||| | ||||||||||||||  ||   |||    
T  29031973 atatggttaatgttgtttgaagagacattttaaatccattatagcagttagaattatctattttattccttttctacttgaatttgactaagcatatgat 29032072  T
Q  184 tcagaagaagacaaattgtactatctagaagtgacccttctcagaataagataaagatgacaaggcttct 253  Q
    ||||||||||||||||||||||  ||  |||||||| |||||| || |||| |||  |||| ||||||||    
T  29032073 tcagaagaagacaaattgtacttactgaaagtgaccattctcaaaagaagacaaatgtgactaggcttct 29032142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 84 - 205
Target Start/End: Complemental strand, 6561118 - 6560996
Alignment:
Q  84 atatggttaatgtcgtttgaagagacattcaaaatccattgttgcaaataaaagtatctgtttcattccttttgtccttgaa-tttgactacccacgcga 182  Q
    ||||||||||||||||||||| |||||||  |||| || || |||||||| || |||| |||| | |||||||||||||||| |||||||   |||| ||    
T  6561118 atatggttaatgtcgtttgaaaagacattttaaattcaatgatgcaaatataattatccgttttactccttttgtccttgaattttgacttagcacgtga 6561019  T
Q  183 ttcagaagaagacaaattgtact 205  Q
    ||| |||||||||||||||||||    
T  6561018 ttcggaagaagacaaattgtact 6560996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 138 - 205
Target Start/End: Original strand, 15586568 - 15586635
Alignment:
Q  138 tatctgtttcattccttttgtcctt-gaatttgactacccacgcgattcagaagaagacaaattgtact 205  Q
    |||||||||||||| |||||||||| |||||||| ||  |||| ||||||||| |||||||||||||||    
T  15586568 tatctgtttcattcattttgtcctttgaatttga-taggcacgtgattcagaataagacaaattgtact 15586635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 156 - 244
Target Start/End: Original strand, 17291610 - 17291698
Alignment:
Q  156 tgtccttgaatttgactacccacgcgattcagaagaagacaaattgtactatctagaagtgacccttctcagaataagataaagatgac 244  Q
    ||||||||||||||||||   ||| | |||||||| ||||||| ||||||||||  ||| ||||||||| | || |||| |||||||||    
T  17291610 tgtccttgaatttgactaagtacgtggttcagaagtagacaaactgtactatctgaaagcgacccttcttaaaagaagacaaagatgac 17291698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 312 - 389
Target Start/End: Original strand, 17291733 - 17291810
Alignment:
Q  312 agagtctggtcttcactagcttctaggtgactttttctcttctgatccaaagtattgacttctgattgacctttcttc 389  Q
    ||||| ||||||||||||||||   |||||||| ||||||| |||| |||  | |||||||||  |||||||||||||    
T  17291733 agagtttggtcttcactagctttagggtgacttcttctcttttgattcaacatgttgacttctagttgacctttcttc 17291810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 349 - 389
Target Start/End: Original strand, 4312639 - 4312679
Alignment:
Q  349 tcttctgatccaaagtattgacttctgattgacctttcttc 389  Q
    ||||||||||||| || ||||||| ||||||||||||||||    
T  4312639 tcttctgatccaaggtgttgacttttgattgacctttcttc 4312679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 66; Significance: 5e-29; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 84 - 209
Target Start/End: Complemental strand, 7321542 - 7321417
Alignment:
Q  84 atatggttaatgtcgtttgaagagacattcaaaatccattgttgcaaataaaagtatctgtttcattccttttgtccttgaatttgactacccacgcgat 183  Q
    |||||||||||  | |||||| |||||||||||||| |||| |||||||| || |||||||||||||||||||||||||||||||||||   |||  |||    
T  7321542 atatggttaataccatttgaaaagacattcaaaatctattgctgcaaatagaattatctgtttcattccttttgtccttgaatttgacttagcacatgat 7321443  T
Q  184 tcagaagaagacaaattgtactatct 209  Q
    ||||||||||| ||| ||||||||||    
T  7321442 tcagaagaagaaaaactgtactatct 7321417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 84 - 205
Target Start/End: Complemental strand, 28800939 - 28800817
Alignment:
Q  84 atatggttaatgtcgtttgaagagacattcaaaatccattgttgcaaataaaagtatctgtttcattcctttt-gtccttgaatttgactacccacgcga 182  Q
    ||||||||||||| ||||||| |||||||  |||  ||||||||||| || || ||||||||| ||||||||| ||||||||||||||||   |||| ||    
T  28800939 atatggttaatgttgtttgaaaagacatttgaaaatcattgttgcaattagaattatctgtttaattcctttttgtccttgaatttgacttagcacgtga 28800840  T
Q  183 ttcagaagaagacaaattgtact 205  Q
    |||||||||||||||||||||||    
T  28800839 ttcagaagaagacaaattgtact 28800817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 84 - 205
Target Start/End: Complemental strand, 29757667 - 29757546
Alignment:
Q  84 atatggttaatgtcgtttgaagagacattcaaaatccattgttgcaaataaaagtatctgtttcattccttttgtccttgaatttgactacccacgcgat 183  Q
    |||||||||||||| |||||| |||||||| |||||||| | |||||||| || ||| ||||||||||||| | |||||||||||||||   |||| |||    
T  29757667 atatggttaatgtcatttgaaaagacattcgaaatccatggctgcaaatagaattatatgtttcattccttctatccttgaatttgacttaacacgtgat 29757568  T
Q  184 tcagaagaagacaaattgtact 205  Q
    | ||||||||||||| ||||||    
T  29757567 ttagaagaagacaaaatgtact 29757546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 84 - 243
Target Start/End: Original strand, 19008187 - 19008346
Alignment:
Q  84 atatggttaatgtcgtttgaagagacattcaaaatccattgttgcaaataaaagtatctgtttcattccttttgtccttgaatttgactacccacgcgat 183  Q
    ||||| |||||||| ||| ||||||||||| |||| ||| |||||||||| || ||| ||||||||||||||| |||  |||||||||||  |||| |||    
T  19008187 atatgattaatgtcattttaagagacattcgaaattcatggttgcaaatagaattatttgtttcattccttttatccccgaatttgactaatcacgtgat 19008286  T
Q  184 tcagaagaagacaaattgtactatctagaagtgacccttctcagaataagataaagatga 243  Q
    | |||||| || ||| ||||||||||  |||||| |||||||  || |||| ||||||||    
T  19008287 ttagaagaggataaactgtactatctgaaagtgatccttctcgtaagaagacaaagatga 19008346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 85 - 205
Target Start/End: Complemental strand, 29771816 - 29771696
Alignment:
Q  85 tatggttaatgtcgtttgaagagacattcaaaatccattgttgcaaataaaagtatctgtttcattccttttgtccttgaatttgactacccacgcgatt 184  Q
    |||||||||||| ||||||| ||||||   ||| |||||| ||||| || || |||||||||||||| ||||||||||| | || |||   |||| ||||    
T  29771816 tatggttaatgttgtttgaaaagacatctgaaacccattgctgcaagtagaattatctgtttcattctttttgtccttggacttaacttagcacgtgatt 29771717  T
Q  185 cagaagaagacaaattgtact 205  Q
    || ||||||||||| ||||||    
T  29771716 caaaagaagacaaaatgtact 29771696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 90 - 207
Target Start/End: Complemental strand, 18528201 - 18528084
Alignment:
Q  90 ttaatgtcgtttgaagagacattcaaaatccattgttgcaaataaaagtatctgtttcattccttttgtccttgaatttgactacccacgcgattcagaa 189  Q
    |||||| | |||||| |||||||| ||||||| |  | | |||| || ||||||||| ||||||||||||||| |||||||||   |||| |||||||||    
T  18528201 ttaatgccatttgaaaagacattcgaaatccactcctactaatagaattatctgttttattccttttgtccttaaatttgacttaacacgtgattcagaa 18528102  T
Q  190 gaagacaaattgtactat 207  Q
     |||||||| | ||||||    
T  18528101 taagacaaactatactat 18528084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0804 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: scaffold0804
Description:

Target: scaffold0804; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 84 - 256
Target Start/End: Complemental strand, 492 - 320
Alignment:
Q  84 atatggttaatgtcgtttgaagagacattcaaaatccattgttgcaaataaaagtatc-tgtttcattccttttgtccttgaatttgactacccacgcga 182  Q
    |||||||||| ||||||||||| ||||||| ||||||||||  | ||||| || |||| | |||||||| |||||||||||||||||||||  |||| ||    
T  492 atatggttaacgtcgtttgaagggacattcgaaatccattgacggaaatagaattatcctttttcattctttttgtccttgaatttgactaagcacgtga 393  T
Q  183 ttcagaagaagacaaattgtactatctagaagtgacccttctcagaataagataaagatgacaaggcttctagg 256  Q
    |  |||||||||||||||||||||| |  ||||| | ||||||| || |||| ||| ||||| |||||||||||    
T  392 tcgagaagaagacaaattgtactat-tgaaagtggctcttctcataagaagacaaatatgactaggcttctagg 320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 51; Significance: 4e-20; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 84 - 198
Target Start/End: Original strand, 22268673 - 22268787
Alignment:
Q  84 atatggttaatgtcgtttgaagagacattcaaaatccattgttgcaaataaaagtatctgtttcattccttttgtccttgaatttgactacccacgcgat 183  Q
    ||||| ||||||||||||||| |||||||| ||||||||| ||||||||  || ||| | |||||||||||||||||||||||| ||||  | | | |||    
T  22268673 atatgattaatgtcgtttgaaaagacattcgaaatccattattgcaaatctaattatttatttcattccttttgtccttgaattcgacttacaatgtgat 22268772  T
Q  184 tcagaagaagacaaa 198  Q
    | |||||||||||||    
T  22268773 tgagaagaagacaaa 22268787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 84 - 262
Target Start/End: Original strand, 13073644 - 13073821
Alignment:
Q  84 atatggttaatgtcgtttgaagagacattcaaaatccattgttgcaaataaaagtatctgtttcattccttttgtccttgaatttgactacccacgcgat 183  Q
    |||||||||||||| ||| || |||||||| ||||| |||| ||||||| ||| ||| || ||| ||  |||||| |||||||||| |||   ||| |||    
T  13073644 atatggttaatgtcattttaaaagacattcgaaatctattgctgcaaatgaaattatttg-ttcgtttattttgttcttgaatttggctaagtacgtgat 13073742  T
Q  184 tcagaagaagacaaattgtactatctag-aagtgacccttctcagaataagataaagatgacaaggcttctaggcccctc 262  Q
    |||||| ||||||||||||||| ||| | ||||||||||||||| || |||| |||||||||  ||||||| || |||||    
T  13073743 tcagaaaaagacaaattgtact-tcttgaaagtgacccttctcaaaagaagacaaagatgacttggcttcttggtccctc 13073821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 89 - 218
Target Start/End: Complemental strand, 17569646 - 17569517
Alignment:
Q  89 gttaatgtcgtttgaagagacattcaaaatccattgttgcaaataaaagtatctgtttcattccttttgtccttgaatttgactacccacgcgattcaga 188  Q
    ||||||||| | |||| |||||||| ||| |||||| |||||||| || || || |||||||| |||| ||||||||||||||    |||| |||| |||    
T  17569646 gttaatgtcatctgaaaagacattcgaaacccattgctgcaaatagaattacctatttcattctttttttccttgaatttgacataacacgtgatttaga 17569547  T
Q  189 agaagacaaattgtactatctagaagtgac 218  Q
    ||| |||||  ||||||||||| |||||||    
T  17569546 agaggacaagctgtactatctaaaagtgac 17569517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 321 - 389
Target Start/End: Original strand, 13073872 - 13073940
Alignment:
Q  321 tcttcactagcttctaggtgactttttctcttctgatccaaagtattgacttctgattgacctttcttc 389  Q
    ||||||||||||||| |||||||| ||||||||||||| ||  | |||||||||||||  |||||||||    
T  13073872 tcttcactagcttctgggtgacttcttctcttctgatctaacatgttgacttctgatttccctttcttc 13073940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 83 - 203
Target Start/End: Original strand, 23959379 - 23959499
Alignment:
Q  83 tatatggttaatgtcgtttgaagagacattcaaaatccattgttgcaaataaaagtatctgtttcattccttttgtccttgaatttgactacccacgcga 182  Q
    |||| ||||||||| ||| | | |||||||  ||||| |||  ||||| || || |||||||||| ||| ||||||  |||||||||||||  || | ||    
T  23959379 tatacggttaatgttgttggcatagacatttgaaatctattagtgcaagtagaattatctgtttctttcattttgtttttgaatttgactaaacatgtga 23959478  T
Q  183 ttcagaagaagacaaattgta 203  Q
    |  ||||||||||||||||||    
T  23959479 tcgagaagaagacaaattgta 23959499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 84 - 205
Target Start/End: Original strand, 20690081 - 20690200
Alignment:
Q  84 atatggttaatgtcgtttgaagagacattcaaaatccattgttgcaaataaaagtatctgtttcattccttttgtccttgaatttgactacccacgcgat 183  Q
    ||||||||||||||||||||| |||||||  ||| |||||  ||||| || || ||| |||| ||||||  ||||||||||||||||||   ||||   |    
T  20690081 atatggttaatgtcgtttgaaaagacatttgaaaaccatttctgcaattagaattatttgttccattcc--ttgtccttgaatttgacttagcacgtagt 20690178  T
Q  184 tcagaagaagacaaattgtact 205  Q
    ||||||||||||||||||||||    
T  20690179 tcagaagaagacaaattgtact 20690200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 283 - 389
Target Start/End: Complemental strand, 25936175 - 25936070
Alignment:
Q  283 agtttgactgacttagaacctgattatcgagagtctggtcttcactagcttctaggtgactttttctcttctgatccaaagtattgacttctgattgacc 382  Q
    ||||||| ||||| |||||||||| ||| |||||||||||||||||||||||| || ||||| ||||||| ||| ||||  | || ||||||| || |||    
T  25936175 agtttgagtgactcagaacctgatgatccagagtctggtcttcactagcttctgggcgacttcttctcttttga-ccaacatgttaacttctggttaacc 25936077  T
Q  383 tttcttc 389  Q
    |||||||    
T  25936076 tttcttc 25936070  T

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Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 84 - 173
Target Start/End: Original strand, 31730529 - 31730618
Alignment:
Q  84 atatggttaatgtcgtttgaagagacattcaaaatccattgttgcaaataaaagtatctgtttcattccttttgtccttgaatttgacta 173  Q
    ||||||||||||||||| | |||||||||  |||||||||| ||||| || || |||| | |||||||||||| || |||||||||||||    
T  31730529 atatggttaatgtcgttggtagagacatttgaaatccattgctgcaagtagaattatccgcttcattccttttatctttgaatttgacta 31730618  T

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Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 90 - 200
Target Start/End: Complemental strand, 17338183 - 17338073
Alignment:
Q  90 ttaatgtcgtttgaagagacattcaaaatccattgttgcaaataaaagtatctgtttcattccttttgtccttgaatttgactacccacgcgattcagaa 189  Q
    ||||||||||||||| ||||||| |||||  ||||||||||||| || | || | || ||| ||||||||||||||||||| |   |||| |||| ||||    
T  17338183 ttaatgtcgtttgaaaagacatttaaaatttattgttgcaaatagaattctccgctttatttcttttgtccttgaatttgaattagcacgtgatttagaa 17338084  T
Q  190 gaagacaaatt 200  Q
    ||||| |||||    
T  17338083 gaagataaatt 17338073  T

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Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 84 - 197
Target Start/End: Original strand, 19692468 - 19692581
Alignment:
Q  84 atatggttaatgtcgtttgaagagacattcaaaatccattgttgcaaataaaagtatctgtttcattccttttgtccttgaatttgactacccacgcgat 183  Q
    |||||||||||||| ||||||  | ||||| |||  ||||| ||||||||||| ||| |||| ||||  ||||||| |||||||||||||  |||  |||    
T  19692468 atatggttaatgtcatttgaaaggtcattccaaaaacattgctgcaaataaaattatttgttccattaattttgtctttgaatttgactaagcacatgat 19692567  T
Q  184 tcagaagaagacaa 197  Q
    |||||| |||||||    
T  19692568 tcagaataagacaa 19692581  T

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Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 138 - 208
Target Start/End: Original strand, 6038015 - 6038085
Alignment:
Q  138 tatctgtttcattccttttgtccttgaatttgactacccacgcgattcagaagaagacaaattgtactatc 208  Q
    |||||||||||||| ||||||||||||||||| ||   |||| |||||||||||||| | ||| |||||||    
T  6038015 tatctgtttcattctttttgtccttgaatttgtctctacacgtgattcagaagaagatatattatactatc 6038085  T

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Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 84 - 132
Target Start/End: Complemental strand, 19642127 - 19642079
Alignment:
Q  84 atatggttaatgtcgtttgaagagacattcaaaatccattgttgcaaat 132  Q
    ||||||||| ||||||||||| |||||||  ||||||||||||||||||    
T  19642127 atatggttattgtcgtttgaaaagacatttgaaatccattgttgcaaat 19642079  T

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Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 84 - 162
Target Start/End: Complemental strand, 25936341 - 25936263
Alignment:
Q  84 atatggttaatgtcgtttgaagagacattcaaaatccattgttgcaaataaaagtatctgtttcattccttttgtcctt 162  Q
    ||||||||||||| ||| ||| | |||||  |||||||||| ||| |||| || |||  ||||||||||||||||||||    
T  25936341 atatggttaatgttgttagaaaaaacatttgaaatccattgctgccaatagaattattcgtttcattccttttgtcctt 25936263  T

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Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 349 - 394
Target Start/End: Original strand, 25604580 - 25604625
Alignment:
Q  349 tcttctgatccaaagtattgacttctgattgacctttcttcttatc 394  Q
    |||| |||||||| || |||||||||||||||||||||||| ||||    
T  25604580 tcttatgatccaatgtgttgacttctgattgacctttcttcatatc 25604625  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 85 - 205
Target Start/End: Original strand, 20245356 - 20245476
Alignment:
Q  85 tatggttaatgtcgtttgaagagacattcaaaatccattgttgcaaataaaagtatctgtttcattccttttgtccttgaatttgactacccacgcgatt 184  Q
    ||||||||||| | ||| || |||||||  ||| ||||| ||||||  | || | || |||| |||||||||||| ||||||||||||   |||| | ||    
T  20245356 tatggttaatgccattttaaaagacatttgaaaaccattattgcaatcagaattgtccgtttaattccttttgtctttgaatttgacttagcacgtgttt 20245455  T
Q  185 cagaagaagacaaattgtact 205  Q
    |||||||||||||||| ||||    
T  20245456 cagaagaagacaaattatact 20245476  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 339 - 388
Target Start/End: Original strand, 11545446 - 11545495
Alignment:
Q  339 tgactttttctcttctgatccaaagtattgacttctgattgacctttctt 388  Q
    ||||||| | ||||||||||||| || ||||||||||||| |||||||||    
T  11545446 tgactttctttcttctgatccaaggtgttgacttctgattaacctttctt 11545495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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