View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6336_low_8 (Length: 389)
Name: NF6336_low_8
Description: NF6336
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6336_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 348; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 1 - 381
Target Start/End: Complemental strand, 7926876 - 7926497
Alignment:
| Q |
1 |
tcaaattcacaatcaactagtattgtttggaacccagctttggaaaacggaaatgagggtttttacggtggaaacaaaaaccgtgttgttacggtggttt |
100 |
Q |
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| T |
7926876 |
tcaaattcacaatcaactagtattgtttggaacccagctttggaaaacggaaatgaaggtttttacggtggaaacaaaaaccgtgttgttacggtggttt |
7926777 |
T |
|
| Q |
101 |
tgttggggtggcttggagcaaaaaccagacaccttaaaagatatgctgaatggtacaattcacgtggttttcatgcggttacttttgttgttgatgtgaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7926776 |
tgttggggtggcttggagcaaaaaccagacaccttaaaagatatgctgaatggtacaattcacgtggttttcatgcggttacttttgttgttgatgtgaa |
7926677 |
T |
|
| Q |
201 |
agagattcttggatttgaccttggacgtgtgcttgagnnnnnnnttgaaatttttgctgaggaattggcttcatgggtttcttgtgaggaaaaggatggg |
300 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7926676 |
agagattcttggatttgaccttggacgtgtgcttgagaaaaaaattgaaatttttgctgaggaattggcttcatgggtttcttgtgaggaaaaggatggg |
7926577 |
T |
|
| Q |
301 |
agagaaagatgtttgatttttcacactttcagtaacactggttggtttgtgtaagtgggttttgttaatggttttgatgat |
381 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
7926576 |
agagaaagatgtttgatttttcacactttcagtaacactggttggtttgtgtaagtggg-tttgttaatggttttgatgat |
7926497 |
T |
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