View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6336_low_9 (Length: 387)
Name: NF6336_low_9
Description: NF6336
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6336_low_9 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 299; Significance: 1e-168; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 40 - 386
Target Start/End: Complemental strand, 28730581 - 28730235
Alignment:
| Q |
40 |
aggagcatcggaaggagcaggtgtcggagccagagctgctactgtttcagattctgctggtcaggcgacggaagaaacctgctctgctcttgatgagcgt |
139 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||| |||| |
|
|
| T |
28730581 |
aggagcatcggaaggagcaggtgtcggagccagagctgctactgtatcagattctgctggtcaggcgactgaagaaacctgctctgctcttgatgggcgt |
28730482 |
T |
|
| Q |
140 |
ggtggttgtgctgctgatgtcactgctgcaacaggtgtgtctcctatgcctcaggtcaggccaatgattgagattgaagatcaccatggcctgtgagtgt |
239 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
28730481 |
ggtggctgtgctgctgatgtcactgctgcaacaggtgtgtctcccatgcctcaggtcaggccaatgtttgagattgaagatcaccatggcctgtgagtgt |
28730382 |
T |
|
| Q |
240 |
gatggttcgatgatgacgaagattgcgatttacttcattctctgctgaagtaaaactatatgaaatttgtcgttaataagtttacactgttgttcatcta |
339 |
Q |
| |
|
||||||| ||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||| |
|
|
| T |
28730381 |
gatggtttgatcatgacgaagattgcgatttacttctttctctgctgaagtaaaactatatgaaatttgtagttaataagtttacaccgttgttcatcta |
28730282 |
T |
|
| Q |
340 |
atgtagctaattcacaccgttgcttagttctttttagtctgtgctgc |
386 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
28730281 |
atgtagctaattcacaccgttgcttagttctttttagtttgtgctgc |
28730235 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 300 - 336
Target Start/End: Original strand, 33078556 - 33078592
Alignment:
| Q |
300 |
tgaaatttgtcgttaataagtttacactgttgttcat |
336 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||| |
|
|
| T |
33078556 |
tgaaatttgtagttaataagtttacactgttgttcat |
33078592 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 212 - 283
Target Start/End: Original strand, 33078483 - 33078557
Alignment:
| Q |
212 |
attgaagatcaccatggcctgtgagtgtgatggttc---gatgatgacgaagattgcgatttacttcattctctg |
283 |
Q |
| |
|
||||||||||||||||| |||||| || |||| ||| |||||||| |||||| ||| |||||||| ||||||| |
|
|
| T |
33078483 |
attgaagatcaccatgggctgtgactgcgatgcttcaatgatgatgatgaagatcgcggtttacttctttctctg |
33078557 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 240; Significance: 1e-133; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 9 - 386
Target Start/End: Complemental strand, 38121047 - 38120658
Alignment:
| Q |
9 |
atcctattggggctgcttatgatactatcttaggag---------catcggaaggagcaggtgtcggagccagagctgctactgtttcagattctgctgg |
99 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
38121047 |
atcctattgcggctgcttatgatactatcttaggaggtgaaggagcatcggaaggagcgggtgtcggagccagagctgctactgtatcagattctgctgg |
38120948 |
T |
|
| Q |
100 |
tcaggcgacggaagaaacctgctctgctcttgatgagcgtggtggttgtgctgctgatgtcactgctgcaacaggtgtgtctcctatgcctcaggtcagg |
199 |
Q |
| |
|
|||||| |||||||||||||||||||||| ||||| ||||||||||||||||||||||||||| ||||| ||||||||||||| ||||||||||||| | |
|
|
| T |
38120947 |
tcaggccacggaagaaacctgctctgctcctgatggacgtggtggttgtgctgctgatgtcactactgcagcaggtgtgtctcccatgcctcaggtcaag |
38120848 |
T |
|
| Q |
200 |
ccaatgattgagattgaagatcaccatggcctgtgagtgtgatggttcgatg---atgacgaagattgcgatttacttcattctctgctgaagtaaaact |
296 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||| |||| ||||||| |||| |||||||||| |||| ||| |||||||||||||| || || |
|
|
| T |
38120847 |
ccaatggttgagattgaagatcaccatggcctgtgagtgcgatgcttcgatgatgatgatgaagattgcggtttagttctttctctgctgaagtgaatct |
38120748 |
T |
|
| Q |
297 |
atatgaaatttgtcgttaataagtttacactgttgttcatctaatgtagctaattcacaccgttgcttagttctttttagtctgtgctgc |
386 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||| ||| |||||||||||||||| |||||||| |
|
|
| T |
38120747 |
ctatgaaatttgtagttaataagtttacactgttgtccatctaatgtagctaattcacacggttccttagttctttttagtttgtgctgc |
38120658 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 166; E-Value: 9e-89
Query Start/End: Original strand, 40 - 325
Target Start/End: Original strand, 38609116 - 38609401
Alignment:
| Q |
40 |
aggagcatcggaaggagcaggtgtcggagccagagctgctactgtttcagattctgctggtcaggcgacggaagaaacctgctctgctcttgatgagcgt |
139 |
Q |
| |
|
|||||| ||||||||||||||||| |||||| |||| | ||| | | ||||||| | ||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
38609116 |
aggagcgtcggaaggagcaggtgttggagccggagcatcaactttattagattctccaggtcaggcgacggaagaaacctgctctgctcttgatggacgt |
38609215 |
T |
|
| Q |
140 |
ggtggttgtgctgctgatgtcactgctgcaacaggtgtgtctcctatgcctcaggtcaggccaatgattgagattgaagatcaccatggcctgtgagtgt |
239 |
Q |
| |
|
|||||||||||||||| ||||||| || || ||||||||||||| ||||||||||||| ||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
38609216 |
ggtggttgtgctgctggtgtcactactacagcaggtgtgtctcccatgcctcaggtcaagccaatggttgagattgaagatcaccatggcctgtgagtgc |
38609315 |
T |
|
| Q |
240 |
gatggttcgatgatgacgaagattgcgatttacttcattctctgctgaagtaaaactatatgaaatttgtcgttaataagtttaca |
325 |
Q |
| |
|
|||| ||||||||||| |||||||||| |||| ||| |||||||||||||| || || |||||||||||| ||||||||||||||| |
|
|
| T |
38609316 |
gatgcttcgatgatgatgaagattgcggtttagttctttctctgctgaagtgaatctctatgaaatttgtagttaataagtttaca |
38609401 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 166; E-Value: 9e-89
Query Start/End: Original strand, 40 - 325
Target Start/End: Original strand, 38793899 - 38794184
Alignment:
| Q |
40 |
aggagcatcggaaggagcaggtgtcggagccagagctgctactgtttcagattctgctggtcaggcgacggaagaaacctgctctgctcttgatgagcgt |
139 |
Q |
| |
|
|||||| ||||||||||||||||| |||||| |||| | ||| | | ||||||| | ||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
38793899 |
aggagcgtcggaaggagcaggtgttggagccggagcatcaactttattagattctccaggtcaggcgacggaagaaacctgctctgctcttgatggacgt |
38793998 |
T |
|
| Q |
140 |
ggtggttgtgctgctgatgtcactgctgcaacaggtgtgtctcctatgcctcaggtcaggccaatgattgagattgaagatcaccatggcctgtgagtgt |
239 |
Q |
| |
|
|||||||||||||||| ||||||| || || ||||||||||||| ||||||||||||| ||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
38793999 |
ggtggttgtgctgctggtgtcactactacagcaggtgtgtctcccatgcctcaggtcaagccaatggttgagattgaagatcaccatggcctgtgagtgc |
38794098 |
T |
|
| Q |
240 |
gatggttcgatgatgacgaagattgcgatttacttcattctctgctgaagtaaaactatatgaaatttgtcgttaataagtttaca |
325 |
Q |
| |
|
|||| ||||||||||| |||||||||| |||| ||| |||||||||||||| || || |||||||||||| ||||||||||||||| |
|
|
| T |
38794099 |
gatgcttcgatgatgatgaagattgcggtttagttctttctctgctgaagtgaatctctatgaaatttgtagttaataagtttaca |
38794184 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 171 - 280
Target Start/End: Original strand, 34592845 - 34592957
Alignment:
| Q |
171 |
caggtgtgtctcctatgcctcaggtcaggccaatgattgagattgaagatcaccatggcctgtgagtgtgatggttc---gatgatgacgaagattgcga |
267 |
Q |
| |
|
||||||||||||| |||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||| ||| |||||||| |||||||||| |
|
|
| T |
34592845 |
caggtgtgtctcccgtgcctcgggtcaggccaatggttgagattgaagatcaccatggcctgtgagtgtgatgcttcaatgatgatgatgaagattgcgg |
34592944 |
T |
|
| Q |
268 |
tttacttcattct |
280 |
Q |
| |
|
|||||||| |||| |
|
|
| T |
34592945 |
tttacttctttct |
34592957 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University