View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6337_high_1 (Length: 518)
Name: NF6337_high_1
Description: NF6337
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6337_high_1 |
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Alignment Details
Target: chr6 (Bit Score: 440; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 440; E-Value: 0
Query Start/End: Original strand, 17 - 501
Target Start/End: Complemental strand, 5344581 - 5344087
Alignment:
| Q |
17 |
taggggagaagcgttataaagtatataaaaacacttacaattcatcaatcacaaacctcaacagtggaaataaaacctcgagagtggaaactaaacattg |
116 |
Q |
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| T |
5344581 |
taggggagaagcgttataaagtatataaaaacacttacaattcatcaatcacaaacctcaacagtggaaataaaacctcgagagtggaaactaaacattg |
5344482 |
T |
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| Q |
117 |
gttatattttatttataatattgttgcagaagttattaaaggccatctaagaccattatacggatagttcaaaaatacgaaaagatagataggtttgaaa |
216 |
Q |
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| T |
5344481 |
gttatattttatttataatattgttgcagaagttattaaaggccatctaagaccattatacggatagttcaaaaatacgaaaagatagataggtttgaaa |
5344382 |
T |
|
| Q |
217 |
tctagatttaaagccttttcgattagttagtcatgattgcaaccttttcatttaatttattctccttatatcacaagattttaggtggtaattgtatatt |
316 |
Q |
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| T |
5344381 |
tttagatttaaagccttttcgattagttagtcatgattgcaaccttttcatttaatttattctccttatatcacaagattttaggtggtaattgtatatt |
5344282 |
T |
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| Q |
317 |
ttgtctgcataagttgaaggagctttctagatcctgcagactaaaaatataaataaatcccatttaattatattgggaaaaaccaattt----------a |
406 |
Q |
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| T |
5344281 |
ttgtctgcataagttgaaggagctttctagatcctgcagactaaaaatataaataaatcccatttaattatattgggaaaaaccaatttctcacatggat |
5344182 |
T |
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| Q |
407 |
aaaagataatgcctgactgacgtttagaaagagtggcatcccttgtttaacaagccacttttgtaaggaagagttagacccaatatgataaagct |
501 |
Q |
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| T |
5344181 |
taaagataatgcctgactaacgtttagaaagagtggcatcccttgcttaacaagccacttttgtaaggaagagttagacccaatatgataaagct |
5344087 |
T |
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